RNA–Protein interactions for RNA: ENST00000275233.11

SHPRH-201, Transcript of SNF2 histone linker PHD RING helicase, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SHPRH, Length 6,649 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHPRH-201ENST00000275233 DCAF8L2P0C7V8 631 aa21■□□□□ 0.95
SHPRH-201ENST00000275233 SUPT5HO00267 1087 aaKnown RBP19.7■□□□□ 0.74
SHPRH-201ENST00000275233 EHMT2Q96KQ7 1210 aa19.54■□□□□ 0.72
SHPRH-201ENST00000275233 SHROOM4Q9ULL8 1493 aa19.39■□□□□ 0.69
SHPRH-201ENST00000275233 NISCHQ9Y2I1 1504 aa18.96■□□□□ 0.63
SHPRH-201ENST00000275233 TTBK1Q5TCY1 1321 aaPredicted RBP18.82■□□□□ 0.6
SHPRH-201ENST00000275233 APLP2Q06481 763 aa18.76■□□□□ 0.59
SHPRH-201ENST00000275233 FAM9AQ8IZU1 332 aaPredicted RBP18.72■□□□□ 0.59
SHPRH-201ENST00000275233 RANGAP1P46060 587 aaPredicted RBP18.62■□□□□ 0.57
SHPRH-201ENST00000275233 PELP1Q8IZL8 1130 aaKnown RBP18.6■□□□□ 0.57
SHPRH-201ENST00000275233 ATP1B4Q9UN42 357 aaPredicted RBP18.42■□□□□ 0.54
SHPRH-201ENST00000275233 PCGF6Q9BYE7 350 aa18.37■□□□□ 0.53
SHPRH-201ENST00000275233 TRIM41Q8WV44 630 aa18.09■□□□□ 0.49
SHPRH-201ENST00000275233 CCER1Q8TC90 406 aaPredicted RBP18.08■□□□□ 0.48
SHPRH-201ENST00000275233 ERICH6Q7L0X2 663 aa18.08■□□□□ 0.48
SHPRH-201ENST00000275233 UBTFP17480 764 aaKnown RBP18.04■□□□□ 0.48
SHPRH-201ENST00000275233 PPARGC1BQ86YN6 1023 aaKnown RBP17.95■□□□□ 0.46
SHPRH-201ENST00000275233 YTHDC1Q96MU7 727 aaKnown RBP17.9■□□□□ 0.46
SHPRH-201ENST00000275233 CENPBP07199 599 aaPredicted RBP17.89■□□□□ 0.45
SHPRH-201ENST00000275233 MYT1LQ9UL68 1186 aa17.78■□□□□ 0.44
SHPRH-201ENST00000275233 ZEB1P37275 1124 aaPredicted RBP17.74■□□□□ 0.43
SHPRH-201ENST00000275233 NEFLP07196 543 aa17.69■□□□□ 0.42
SHPRH-201ENST00000275233 POLR3GLQ9BT43 218 aa17.68■□□□□ 0.42
SHPRH-201ENST00000275233 ITGAEP38570 1179 aa17.68■□□□□ 0.42
SHPRH-201ENST00000275233 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.68■□□□□ 0.42
SHPRH-201ENST00000275233 HNRNPUL2Q1KMD3 747 aaKnown RBP17.68■□□□□ 0.42
SHPRH-201ENST00000275233 CHIC1Q5VXU3 224 aa17.65■□□□□ 0.42
SHPRH-201ENST00000275233 CNGB1Q14028 1251 aaPredicted RBP17.62■□□□□ 0.41
SHPRH-201ENST00000275233 SLC4A1APQ9BWU0 796 aaKnown RBP17.41■□□□□ 0.38
SHPRH-201ENST00000275233 MYT1Q01538 1121 aa17.34■□□□□ 0.37
SHPRH-201ENST00000275233 LOC105371045A0A1W2PR82 267 aa17.33■□□□□ 0.36
SHPRH-201ENST00000275233 DAXXQ9UER7 740 aaPredicted RBP17.32■□□□□ 0.36
SHPRH-201ENST00000275233 TRIM26Q12899 539 aaPredicted RBP17.3■□□□□ 0.36
SHPRH-201ENST00000275233 HRCP23327 699 aa17.14■□□□□ 0.33
SHPRH-201ENST00000275233 FAM50AQ14320 339 aaKnown RBP17.1■□□□□ 0.33
SHPRH-201ENST00000275233 PABPN1Q86U42 306 aaKnown RBP eCLIP17.06■□□□□ 0.32
SHPRH-201ENST00000275233 TRIM52Q96A61 297 aa17.04■□□□□ 0.32
SHPRH-201ENST00000275233 CLSPNQ9HAW4 1339 aa17.03■□□□□ 0.32
SHPRH-201ENST00000275233 NEUROD1Q13562 356 aa16.99■□□□□ 0.31
SHPRH-201ENST00000275233 FBLN2P98095 1184 aa16.95■□□□□ 0.3
SHPRH-201ENST00000275233 ZNF326Q5BKZ1 582 aaKnown RBP16.94■□□□□ 0.3
SHPRH-201ENST00000275233 ZNF316A6NFI3 1004 aaPredicted RBP16.92■□□□□ 0.3
SHPRH-201ENST00000275233 BCL11AQ9H165 835 aa16.9■□□□□ 0.3
SHPRH-201ENST00000275233 ABCC9O60706 1549 aa16.88■□□□□ 0.29
SHPRH-201ENST00000275233 SLC24A1O60721 1099 aa16.88■□□□□ 0.29
SHPRH-201ENST00000275233 ARID3CA6NKF2 412 aa16.84■□□□□ 0.29
SHPRH-201ENST00000275233 DIEXFQ68CQ4 756 aaKnown RBP16.84■□□□□ 0.29
SHPRH-201ENST00000275233 BCANQ96GW7 911 aa16.82■□□□□ 0.28
SHPRH-201ENST00000275233 RTL5Q5HYW3 569 aaPredicted RBP16.75■□□□□ 0.27
SHPRH-201ENST00000275233 P3H3Q8IVL6 736 aa16.73■□□□□ 0.27
SHPRH-201ENST00000275233 PLPPR3Q6T4P5 718 aa16.68■□□□□ 0.26
SHPRH-201ENST00000275233 ZBTB47Q9UFB7 747 aaPredicted RBP16.66■□□□□ 0.26
SHPRH-201ENST00000275233 ANP32CO43423 234 aa16.63■□□□□ 0.25
SHPRH-201ENST00000275233 CANXP27824 592 aaKnown RBP16.62■□□□□ 0.25
SHPRH-201ENST00000275233 ZNF777Q9ULD5 760 aaPredicted RBP16.61■□□□□ 0.25
SHPRH-201ENST00000275233 NEFMP07197 916 aa16.49■□□□□ 0.23
SHPRH-201ENST00000275233 GTF3C3Q9Y5Q9 886 aa16.49■□□□□ 0.23
SHPRH-201ENST00000275233 CDK11AQ9UQ88 783 aaPredicted RBP16.48■□□□□ 0.23
SHPRH-201ENST00000275233 CHGAP10645 457 aaKnown RBP16.46■□□□□ 0.23
SHPRH-201ENST00000275233 ESF1Q9H501 851 aaKnown RBP16.43■□□□□ 0.22
SHPRH-201ENST00000275233 STAG3Q9UJ98 1225 aa16.4■□□□□ 0.22
SHPRH-201ENST00000275233 NPM2Q86SE8 214 aaKnown RBP16.38■□□□□ 0.21
SHPRH-201ENST00000275233 SENP3Q9H4L4 574 aaPredicted RBP16.31■□□□□ 0.2
SHPRH-201ENST00000275233 SALL2Q9Y467 1007 aaPredicted RBP16.31■□□□□ 0.2
SHPRH-201ENST00000275233 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.28■□□□□ 0.21e-6■■□□□ 11.8
SHPRH-201ENST00000275233 CSRNP3Q8WYN3 585 aa16.27■□□□□ 0.19
SHPRH-201ENST00000275233 PLEKHG5O94827 1062 aa16.25■□□□□ 0.19
SHPRH-201ENST00000275233 SCAF1Q9H7N4 1312 aaKnown RBP16.25■□□□□ 0.19
SHPRH-201ENST00000275233 CHIC2Q9UKJ5 165 aa16.23■□□□□ 0.19
SHPRH-201ENST00000275233 NPM1P06748 294 aaKnown RBP eCLIP16.22■□□□□ 0.19
SHPRH-201ENST00000275233 FAM9BQ8IZU0 186 aa16.2■□□□□ 0.18
SHPRH-201ENST00000275233 ANP32AP39687 249 aaKnown RBP16.2■□□□□ 0.18
SHPRH-201ENST00000275233 A0A0G2JS52 829 aa16.19■□□□□ 0.18
SHPRH-201ENST00000275233 SCRIBQ14160 1630 aa16.17■□□□□ 0.18
SHPRH-201ENST00000275233 HSP90AA1P07900 732 aaKnown RBP16.16■□□□□ 0.18
SHPRH-201ENST00000275233 TONSLQ96HA7 1378 aa16.16■□□□□ 0.18
SHPRH-201ENST00000275233 KDM2AQ9Y2K7 1162 aa16.14■□□□□ 0.18
SHPRH-201ENST00000275233 FKBP8Q14318 412 aa16.14■□□□□ 0.17
SHPRH-201ENST00000275233 ZBTB7CA1YPR0 619 aa16.14■□□□□ 0.17
SHPRH-201ENST00000275233 DDX10Q13206 875 aaKnown RBP16.13■□□□□ 0.17
SHPRH-201ENST00000275233 HNRNPUQ00839 825 aaKnown RBP eCLIP16.12■□□□□ 0.17
SHPRH-201ENST00000275233 ACIN1Q9UKV3 1341 aaKnown RBP16.07■□□□□ 0.16
SHPRH-201ENST00000275233 ARXQ96QS3 562 aa16.04■□□□□ 0.16
SHPRH-201ENST00000275233 HIRIP3Q9BW71 556 aaPredicted RBP16.04■□□□□ 0.16
SHPRH-201ENST00000275233 C14orf37Q86TY3 774 aa16.03■□□□□ 0.16
SHPRH-201ENST00000275233 TMC1Q8TDI8 760 aa16.02■□□□□ 0.16
SHPRH-201ENST00000275233 UPF2Q9HAU5 1272 aaKnown RBP16■□□□□ 0.15
SHPRH-201ENST00000275233 WDR43Q15061 677 aaKnown RBP eCLIP16■□□□□ 0.15
SHPRH-201ENST00000275233 ANP32BQ92688 251 aaKnown RBP16■□□□□ 0.15
SHPRH-201ENST00000275233 KCNH8Q96L42 1107 aa15.98■□□□□ 0.15
SHPRH-201ENST00000275233 CHMP7Q8WUX9 453 aaPredicted RBP15.97■□□□□ 0.15
SHPRH-201ENST00000275233 IRX6P78412 446 aaPredicted RBP15.97■□□□□ 0.15
SHPRH-201ENST00000275233 SENP3-EIF4A1A0A087X0R7 540 aa15.96■□□□□ 0.15
SHPRH-201ENST00000275233 EIF5BO60841 1220 aaKnown RBP15.95■□□□□ 0.14
SHPRH-201ENST00000275233 TSPY4P0CV99 314 aa15.95■□□□□ 0.14
SHPRH-201ENST00000275233 TSPY10P0CW01 314 aa15.95■□□□□ 0.14
SHPRH-201ENST00000275233 NBR1Q14596 966 aa15.94■□□□□ 0.14
SHPRH-201ENST00000275233 CCDC136Q96JN2 1154 aa15.92■□□□□ 0.14
SHPRH-201ENST00000275233 RRP7BPQ9NSQ0 103 aa15.91■□□□□ 0.14
SHPRH-201ENST00000275233 MRS2Q9HD23 443 aa15.9■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms