RNA–Protein interactions for RNA: ENST00000475639.5

U2AF1-209, Transcript of U2 small nuclear RNA auxiliary factor 1, humanhuman

TSL 1 (best)

Gene U2AF1, Length 4,694 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
U2AF1-209ENST00000475639 NISCHQ9Y2I1 1504 aa20.19■□□□□ 0.82
U2AF1-209ENST00000475639 HRCP23327 699 aa19.13■□□□□ 0.65
U2AF1-209ENST00000475639 PELP1Q8IZL8 1130 aaKnown RBP18.9■□□□□ 0.62
U2AF1-209ENST00000475639 DCAF8L2P0C7V8 631 aa18.74■□□□□ 0.59
U2AF1-209ENST00000475639 PPARGC1BQ86YN6 1023 aaKnown RBP18.73■□□□□ 0.59
U2AF1-209ENST00000475639 PCGF6Q9BYE7 350 aa18.55■□□□□ 0.56
U2AF1-209ENST00000475639 MYO15BQ96JP2 1530 aa18.35■□□□□ 0.53
U2AF1-209ENST00000475639 SCAF1Q9H7N4 1312 aaKnown RBP18.31■□□□□ 0.52
U2AF1-209ENST00000475639 MYT1Q01538 1121 aa18.24■□□□□ 0.51
U2AF1-209ENST00000475639 SUPT5HO00267 1087 aaKnown RBP18.2■□□□□ 0.5
U2AF1-209ENST00000475639 SHROOM4Q9ULL8 1493 aa18.15■□□□□ 0.5
U2AF1-209ENST00000475639 CHIC1Q5VXU3 224 aa18.07■□□□□ 0.48
U2AF1-209ENST00000475639 DCAF1Q9Y4B6 1507 aa18■□□□□ 0.47
U2AF1-209ENST00000475639 CCDC180Q9P1Z9 1646 aa17.86■□□□□ 0.45
U2AF1-209ENST00000475639 ERICH6Q7L0X2 663 aa17.85■□□□□ 0.45
U2AF1-209ENST00000475639 TRIM26Q12899 539 aaPredicted RBP17.85■□□□□ 0.45
U2AF1-209ENST00000475639 CCER1Q8TC90 406 aaPredicted RBP17.81■□□□□ 0.44
U2AF1-209ENST00000475639 ZEB1P37275 1124 aaPredicted RBP17.78■□□□□ 0.44
U2AF1-209ENST00000475639 ACIN1Q9UKV3 1341 aaKnown RBP17.72■□□□□ 0.43
U2AF1-209ENST00000475639 LOC105371045A0A1W2PR82 267 aa17.69■□□□□ 0.42
U2AF1-209ENST00000475639 NEUROD1Q13562 356 aa17.67■□□□□ 0.42
U2AF1-209ENST00000475639 APLP2Q06481 763 aa17.64■□□□□ 0.41
U2AF1-209ENST00000475639 GTF3C3Q9Y5Q9 886 aa17.59■□□□□ 0.41
U2AF1-209ENST00000475639 CENPBP07199 599 aaPredicted RBP17.5■□□□□ 0.39
U2AF1-209ENST00000475639 EHMT2Q96KQ7 1210 aa17.49■□□□□ 0.39
U2AF1-209ENST00000475639 FAM9AQ8IZU1 332 aaPredicted RBP17.39■□□□□ 0.37
U2AF1-209ENST00000475639 ZCCHC6Q5VYS8 1495 aaKnown RBP17.26■□□□□ 0.35
U2AF1-209ENST00000475639 NEFLP07196 543 aa17.25■□□□□ 0.35
U2AF1-209ENST00000475639 DIEXFQ68CQ4 756 aaKnown RBP17.22■□□□□ 0.35
U2AF1-209ENST00000475639 TTBK1Q5TCY1 1321 aaPredicted RBP17.22■□□□□ 0.35
U2AF1-209ENST00000475639 BCL11AQ9H165 835 aa17.11■□□□□ 0.33
U2AF1-209ENST00000475639 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.07■□□□□ 0.32
U2AF1-209ENST00000475639 DAXXQ9UER7 740 aaPredicted RBP16.99■□□□□ 0.31
U2AF1-209ENST00000475639 YTHDC1Q96MU7 727 aaKnown RBP16.97■□□□□ 0.31
U2AF1-209ENST00000475639 TRIM41Q8WV44 630 aa16.96■□□□□ 0.31
U2AF1-209ENST00000475639 ANP32EQ9BTT0 268 aa16.88■□□□□ 0.29
U2AF1-209ENST00000475639 ZNF316A6NFI3 1004 aaPredicted RBP16.79■□□□□ 0.28
U2AF1-209ENST00000475639 MIER1Q8N108 512 aa16.76■□□□□ 0.27
U2AF1-209ENST00000475639 CSRNP3Q8WYN3 585 aa16.74■□□□□ 0.27
U2AF1-209ENST00000475639 ATP1B4Q9UN42 357 aaPredicted RBP16.73■□□□□ 0.27
U2AF1-209ENST00000475639 TSHZ2Q9NRE2 1034 aa16.7■□□□□ 0.26
U2AF1-209ENST00000475639 RANGAP1P46060 587 aaPredicted RBP16.68■□□□□ 0.26
U2AF1-209ENST00000475639 SUPT16HQ9Y5B9 1047 aaKnown RBP16.67■□□□□ 0.26
U2AF1-209ENST00000475639 PRKCSHP14314 528 aaPredicted RBP16.67■□□□□ 0.26
U2AF1-209ENST00000475639 RTL5Q5HYW3 569 aaPredicted RBP16.59■□□□□ 0.25
U2AF1-209ENST00000475639 CLSPNQ9HAW4 1339 aa16.58■□□□□ 0.24
U2AF1-209ENST00000475639 UBTFP17480 764 aaKnown RBP16.48■□□□□ 0.23
U2AF1-209ENST00000475639 ABCC9O60706 1549 aa16.47■□□□□ 0.23
U2AF1-209ENST00000475639 RB1CC1Q8TDY2 1594 aa16.43■□□□□ 0.22
U2AF1-209ENST00000475639 RSF1Q96T23 1441 aaPredicted RBP16.4■□□□□ 0.22
U2AF1-209ENST00000475639 POLR3GLQ9BT43 218 aa16.39■□□□□ 0.21
U2AF1-209ENST00000475639 WRNQ14191 1432 aaPredicted RBP eCLIP16.36■□□□□ 0.21
U2AF1-209ENST00000475639 MYT1LQ9UL68 1186 aa16.27■□□□□ 0.19
U2AF1-209ENST00000475639 RBM19Q9Y4C8 960 aaKnown RBP16.26■□□□□ 0.19
U2AF1-209ENST00000475639 BCANQ96GW7 911 aa16.23■□□□□ 0.19
U2AF1-209ENST00000475639 CNGB1Q14028 1251 aaPredicted RBP16.19■□□□□ 0.18
U2AF1-209ENST00000475639 MSH5O43196 834 aa16.19■□□□□ 0.18
U2AF1-209ENST00000475639 CEP162Q5TB80 1403 aa16.19■□□□□ 0.18
U2AF1-209ENST00000475639 HNRNPUL2Q1KMD3 747 aaKnown RBP16.13■□□□□ 0.17
U2AF1-209ENST00000475639 SLC4A1APQ9BWU0 796 aaKnown RBP16.13■□□□□ 0.17
U2AF1-209ENST00000475639 FKBP8Q14318 412 aa16.12■□□□□ 0.17
U2AF1-209ENST00000475639 ITGAEP38570 1179 aa16.09■□□□□ 0.17
U2AF1-209ENST00000475639 ZBTB47Q9UFB7 747 aaPredicted RBP16.09■□□□□ 0.17
U2AF1-209ENST00000475639 KCNH8Q96L42 1107 aa16.07■□□□□ 0.16
U2AF1-209ENST00000475639 TNIKQ9UKE5 1360 aa16.02■□□□□ 0.16
U2AF1-209ENST00000475639 ANO8Q9HCE9 1232 aaPredicted RBP16.02■□□□□ 0.16
U2AF1-209ENST00000475639 FANCIQ9NVI1 1328 aa15.98■□□□□ 0.15
U2AF1-209ENST00000475639 DEKP35659 375 aaKnown RBP15.95■□□□□ 0.14
U2AF1-209ENST00000475639 EIF4G1Q04637 1599 aaKnown RBP15.95■□□□□ 0.14
U2AF1-209ENST00000475639 SCRIBQ14160 1630 aa15.94■□□□□ 0.14
U2AF1-209ENST00000475639 CDK11AQ9UQ88 783 aaPredicted RBP15.91■□□□□ 0.14
U2AF1-209ENST00000475639 ABCC8Q09428 1581 aa15.91■□□□□ 0.14
U2AF1-209ENST00000475639 CCDC88BA6NC98 1476 aa15.91■□□□□ 0.14
U2AF1-209ENST00000475639 DHX57Q6P158 1386 aaKnown RBP15.9■□□□□ 0.14
U2AF1-209ENST00000475639 EIF5BO60841 1220 aaKnown RBP15.89■□□□□ 0.14
U2AF1-209ENST00000475639 SOGA1O94964 1423 aa15.87■□□□□ 0.13
U2AF1-209ENST00000475639 GLIPR1L2Q4G1C9 344 aa15.86■□□□□ 0.13
U2AF1-209ENST00000475639 SALL2Q9Y467 1007 aaPredicted RBP15.84■□□□□ 0.13
U2AF1-209ENST00000475639 ANP32BQ92688 251 aaKnown RBP15.83■□□□□ 0.12
U2AF1-209ENST00000475639 MROH2BQ7Z745 1585 aa15.83■□□□□ 0.12
U2AF1-209ENST00000475639 CECR2Q9BXF3 1484 aa15.82■□□□□ 0.12
U2AF1-209ENST00000475639 WIZO95785 1651 aa15.81■□□□□ 0.12
U2AF1-209ENST00000475639 RUSC2Q8N2Y8 1516 aa15.78■□□□□ 0.12
U2AF1-209ENST00000475639 TRIM52Q96A61 297 aa15.76■□□□□ 0.11
U2AF1-209ENST00000475639 GOLGA3Q08378 1498 aa15.76■□□□□ 0.11
U2AF1-209ENST00000475639 ERICH6BQ5W0A0 696 aa15.74■□□□□ 0.11
U2AF1-209ENST00000475639 ANP32AP39687 249 aaKnown RBP15.73■□□□□ 0.11
U2AF1-209ENST00000475639 CCDC136Q96JN2 1154 aa15.73■□□□□ 0.11
U2AF1-209ENST00000475639 EEA1Q15075 1411 aa15.73■□□□□ 0.11
U2AF1-209ENST00000475639 CANXP27824 592 aaKnown RBP15.73■□□□□ 0.11
U2AF1-209ENST00000475639 CLIP1P30622 1438 aa15.71■□□□□ 0.11
U2AF1-209ENST00000475639 NEFMP07197 916 aa15.71■□□□□ 0.11
U2AF1-209ENST00000475639 VPS8Q8N3P4 1428 aa15.7■□□□□ 0.1
U2AF1-209ENST00000475639 SLC24A1O60721 1099 aa15.69■□□□□ 0.1
U2AF1-209ENST00000475639 DDX10Q13206 875 aaKnown RBP15.69■□□□□ 0.1
U2AF1-209ENST00000475639 BAZ1AQ9NRL2 1556 aaPredicted RBP15.69■□□□□ 0.1
U2AF1-209ENST00000475639 ANP32CO43423 234 aa15.67■□□□□ 0.1
U2AF1-209ENST00000475639 NBR1Q14596 966 aa15.67■□□□□ 0.1
U2AF1-209ENST00000475639 NACADO15069 1562 aa15.67■□□□□ 0.1
U2AF1-209ENST00000475639 UBE2Q2Q8WVN8 375 aa15.66■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms