RNA–Protein interactions for RNA: ENST00000629427.2

SHPRH-211, Transcript of SNF2 histone linker PHD RING helicase, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SHPRH, Length 7,338 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHPRH-211ENST00000629427 DCAF8L2P0C7V8 631 aa20.51■□□□□ 0.87
SHPRH-211ENST00000629427 SUPT5HO00267 1087 aaKnown RBP19.18■□□□□ 0.66
SHPRH-211ENST00000629427 EHMT2Q96KQ7 1210 aa18.95■□□□□ 0.62
SHPRH-211ENST00000629427 SHROOM4Q9ULL8 1493 aa18.82■□□□□ 0.6
SHPRH-211ENST00000629427 PELP1Q8IZL8 1130 aaKnown RBP18.61■□□□□ 0.57
SHPRH-211ENST00000629427 APLP2Q06481 763 aa18.55■□□□□ 0.56
SHPRH-211ENST00000629427 NISCHQ9Y2I1 1504 aa18.54■□□□□ 0.56
SHPRH-211ENST00000629427 FAM9AQ8IZU1 332 aaPredicted RBP18.42■□□□□ 0.54
SHPRH-211ENST00000629427 TTBK1Q5TCY1 1321 aaPredicted RBP18.28■□□□□ 0.52
SHPRH-211ENST00000629427 RANGAP1P46060 587 aaPredicted RBP18.12■□□□□ 0.49
SHPRH-211ENST00000629427 ATP1B4Q9UN42 357 aaPredicted RBP18.07■□□□□ 0.48
SHPRH-211ENST00000629427 PCGF6Q9BYE7 350 aa17.98■□□□□ 0.47
SHPRH-211ENST00000629427 ERICH6Q7L0X2 663 aa17.96■□□□□ 0.47
SHPRH-211ENST00000629427 CCER1Q8TC90 406 aaPredicted RBP17.82■□□□□ 0.44
SHPRH-211ENST00000629427 TRIM41Q8WV44 630 aa17.72■□□□□ 0.43
SHPRH-211ENST00000629427 CENPBP07199 599 aaPredicted RBP17.72■□□□□ 0.43
SHPRH-211ENST00000629427 UBTFP17480 764 aaKnown RBP17.7■□□□□ 0.42
SHPRH-211ENST00000629427 ZEB1P37275 1124 aaPredicted RBP17.58■□□□□ 0.4
SHPRH-211ENST00000629427 NEFLP07196 543 aa17.55■□□□□ 0.4
SHPRH-211ENST00000629427 MYT1LQ9UL68 1186 aa17.52■□□□□ 0.4
SHPRH-211ENST00000629427 YTHDC1Q96MU7 727 aaKnown RBP17.48■□□□□ 0.39
SHPRH-211ENST00000629427 PPARGC1BQ86YN6 1023 aaKnown RBP17.39■□□□□ 0.37
SHPRH-211ENST00000629427 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.36■□□□□ 0.37
SHPRH-211ENST00000629427 HNRNPUL2Q1KMD3 747 aaKnown RBP17.36■□□□□ 0.37
SHPRH-211ENST00000629427 POLR3GLQ9BT43 218 aa17.34■□□□□ 0.37
SHPRH-211ENST00000629427 CHIC1Q5VXU3 224 aa17.28■□□□□ 0.36
SHPRH-211ENST00000629427 ITGAEP38570 1179 aa17.27■□□□□ 0.35
SHPRH-211ENST00000629427 DAXXQ9UER7 740 aaPredicted RBP17.24■□□□□ 0.35
SHPRH-211ENST00000629427 CNGB1Q14028 1251 aaPredicted RBP17.18■□□□□ 0.34
SHPRH-211ENST00000629427 SLC4A1APQ9BWU0 796 aaKnown RBP17.17■□□□□ 0.34
SHPRH-211ENST00000629427 MYT1Q01538 1121 aa17.1■□□□□ 0.33
SHPRH-211ENST00000629427 TRIM26Q12899 539 aaPredicted RBP16.99■□□□□ 0.31
SHPRH-211ENST00000629427 CLSPNQ9HAW4 1339 aa16.86■□□□□ 0.29
SHPRH-211ENST00000629427 ZNF316A6NFI3 1004 aaPredicted RBP16.8■□□□□ 0.28
SHPRH-211ENST00000629427 LOC105371045A0A1W2PR82 267 aa16.8■□□□□ 0.28
SHPRH-211ENST00000629427 HRCP23327 699 aa16.77■□□□□ 0.27
SHPRH-211ENST00000629427 FAM50AQ14320 339 aaKnown RBP16.77■□□□□ 0.27
SHPRH-211ENST00000629427 TRIM52Q96A61 297 aa16.72■□□□□ 0.27
SHPRH-211ENST00000629427 SLC24A1O60721 1099 aa16.66■□□□□ 0.26
SHPRH-211ENST00000629427 RTL5Q5HYW3 569 aaPredicted RBP16.63■□□□□ 0.25
SHPRH-211ENST00000629427 NEUROD1Q13562 356 aa16.62■□□□□ 0.25
SHPRH-211ENST00000629427 ZBTB47Q9UFB7 747 aaPredicted RBP16.58■□□□□ 0.25
SHPRH-211ENST00000629427 FBLN2P98095 1184 aa16.58■□□□□ 0.24
SHPRH-211ENST00000629427 BCANQ96GW7 911 aa16.57■□□□□ 0.24
SHPRH-211ENST00000629427 ZNF326Q5BKZ1 582 aaKnown RBP16.56■□□□□ 0.24
SHPRH-211ENST00000629427 BCL11AQ9H165 835 aa16.56■□□□□ 0.24
SHPRH-211ENST00000629427 PABPN1Q86U42 306 aaKnown RBP eCLIP16.54■□□□□ 0.24
SHPRH-211ENST00000629427 DIEXFQ68CQ4 756 aaKnown RBP16.53■□□□□ 0.24
SHPRH-211ENST00000629427 ABCC9O60706 1549 aa16.44■□□□□ 0.22
SHPRH-211ENST00000629427 CANXP27824 592 aaKnown RBP16.42■□□□□ 0.22
SHPRH-211ENST00000629427 ANP32CO43423 234 aa16.4■□□□□ 0.22
SHPRH-211ENST00000629427 NEFMP07197 916 aa16.4■□□□□ 0.22
SHPRH-211ENST00000629427 ARID3CA6NKF2 412 aa16.33■□□□□ 0.21
SHPRH-211ENST00000629427 CDK11AQ9UQ88 783 aaPredicted RBP16.3■□□□□ 0.2
SHPRH-211ENST00000629427 PLPPR3Q6T4P5 718 aa16.29■□□□□ 0.2
SHPRH-211ENST00000629427 P3H3Q8IVL6 736 aa16.28■□□□□ 0.2
SHPRH-211ENST00000629427 ESF1Q9H501 851 aaKnown RBP16.26■□□□□ 0.19
SHPRH-211ENST00000629427 ZNF777Q9ULD5 760 aaPredicted RBP16.24■□□□□ 0.19
SHPRH-211ENST00000629427 STAG3Q9UJ98 1225 aa16.19■□□□□ 0.18
SHPRH-211ENST00000629427 CHGAP10645 457 aaKnown RBP16.15■□□□□ 0.18
SHPRH-211ENST00000629427 GTF3C3Q9Y5Q9 886 aa16.12■□□□□ 0.17
SHPRH-211ENST00000629427 NPM2Q86SE8 214 aaKnown RBP16.07■□□□□ 0.16
SHPRH-211ENST00000629427 ANP32AP39687 249 aaKnown RBP16.05■□□□□ 0.16
SHPRH-211ENST00000629427 HSP90AA1P07900 732 aaKnown RBP16.04■□□□□ 0.16
SHPRH-211ENST00000629427 NPM1P06748 294 aaKnown RBP eCLIP16.02■□□□□ 0.15
SHPRH-211ENST00000629427 SCAF1Q9H7N4 1312 aaKnown RBP15.99■□□□□ 0.15
SHPRH-211ENST00000629427 ANP32BQ92688 251 aaKnown RBP15.97■□□□□ 0.15
SHPRH-211ENST00000629427 SALL2Q9Y467 1007 aaPredicted RBP15.94■□□□□ 0.14
SHPRH-211ENST00000629427 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.94■□□□□ 0.141e-6■■□□□ 11.8
SHPRH-211ENST00000629427 A0A0G2JS52 829 aa15.94■□□□□ 0.14
SHPRH-211ENST00000629427 UPF2Q9HAU5 1272 aaKnown RBP15.91■□□□□ 0.14
SHPRH-211ENST00000629427 TONSLQ96HA7 1378 aa15.9■□□□□ 0.14
SHPRH-211ENST00000629427 CSRNP3Q8WYN3 585 aa15.89■□□□□ 0.13
SHPRH-211ENST00000629427 FAM9BQ8IZU0 186 aa15.87■□□□□ 0.13
SHPRH-211ENST00000629427 SCRIBQ14160 1630 aa15.85■□□□□ 0.13
SHPRH-211ENST00000629427 PLEKHG5O94827 1062 aa15.85■□□□□ 0.13
SHPRH-211ENST00000629427 HNRNPUQ00839 825 aaKnown RBP eCLIP15.82■□□□□ 0.12
SHPRH-211ENST00000629427 FKBP8Q14318 412 aa15.82■□□□□ 0.12
SHPRH-211ENST00000629427 ZBTB7CA1YPR0 619 aa15.81■□□□□ 0.12
SHPRH-211ENST00000629427 SENP3Q9H4L4 574 aaPredicted RBP15.81■□□□□ 0.12
SHPRH-211ENST00000629427 CHIC2Q9UKJ5 165 aa15.81■□□□□ 0.12
SHPRH-211ENST00000629427 TMC1Q8TDI8 760 aa15.8■□□□□ 0.12
SHPRH-211ENST00000629427 KDM2AQ9Y2K7 1162 aa15.8■□□□□ 0.12
SHPRH-211ENST00000629427 WDR43Q15061 677 aaKnown RBP eCLIP15.79■□□□□ 0.12
SHPRH-211ENST00000629427 DDX10Q13206 875 aaKnown RBP15.77■□□□□ 0.12
SHPRH-211ENST00000629427 C14orf37Q86TY3 774 aa15.76■□□□□ 0.11
SHPRH-211ENST00000629427 EIF5BO60841 1220 aaKnown RBP15.76■□□□□ 0.11
SHPRH-211ENST00000629427 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.76■□□□□ 0.11
SHPRH-211ENST00000629427 ARXQ96QS3 562 aa15.72■□□□□ 0.11
SHPRH-211ENST00000629427 ACIN1Q9UKV3 1341 aaKnown RBP15.72■□□□□ 0.11
SHPRH-211ENST00000629427 TSPY4P0CV99 314 aa15.71■□□□□ 0.11
SHPRH-211ENST00000629427 TSPY10P0CW01 314 aa15.71■□□□□ 0.11
SHPRH-211ENST00000629427 CDK11BP21127 795 aaKnown RBP15.7■□□□□ 0.1
SHPRH-211ENST00000629427 CCDC136Q96JN2 1154 aa15.69■□□□□ 0.1
SHPRH-211ENST00000629427 MYH16Q9H6N6 1097 aa15.69■□□□□ 0.1
SHPRH-211ENST00000629427 CHMP7Q8WUX9 453 aaPredicted RBP15.67■□□□□ 0.1
SHPRH-211ENST00000629427 PPP1R15AO75807 674 aaPredicted RBP15.65■□□□□ 0.1
SHPRH-211ENST00000629427 HAP1P54257 671 aaPredicted RBP15.64■□□□□ 0.09
SHPRH-211ENST00000629427 NBR1Q14596 966 aa15.64■□□□□ 0.09
SHPRH-211ENST00000629427 KCNH8Q96L42 1107 aa15.61■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms