Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
FOXN3O00409 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC17.02■□□□□ 0.32
FOXN3O00409 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC17.02■□□□□ 0.32
FOXN3O00409 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC17.02■□□□□ 0.32
FOXN3O00409 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
FOXN3O00409 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
FOXN3O00409 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC17.02■□□□□ 0.32
FOXN3O00409 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC17.02■□□□□ 0.32
FOXN3O00409 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
FOXN3O00409 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
FOXN3O00409 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
FOXN3O00409 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.32
FOXN3O00409 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.32
FOXN3O00409 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC17.02■□□□□ 0.32
FOXN3O00409 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC17.02■□□□□ 0.32
FOXN3O00409 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC17.02■□□□□ 0.32
FOXN3O00409 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC17.02■□□□□ 0.32
FOXN3O00409 NME4-207ENST00000450036 985 ntTSL 3 BASIC17.02■□□□□ 0.32
FOXN3O00409 AC004967.1-201ENST00000453589 447 ntBASIC17.02■□□□□ 0.32
FOXN3O00409 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
FOXN3O00409 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
FOXN3O00409 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
FOXN3O00409 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
FOXN3O00409 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
FOXN3O00409 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
FOXN3O00409 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
FOXN3O00409 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.31
FOXN3O00409 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
FOXN3O00409 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
FOXN3O00409 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.31
FOXN3O00409 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC17.01■□□□□ 0.31
FOXN3O00409 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC17.01■□□□□ 0.31
FOXN3O00409 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
FOXN3O00409 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
FOXN3O00409 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC17.01■□□□□ 0.31
FOXN3O00409 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
FOXN3O00409 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
FOXN3O00409 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
FOXN3O00409 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
FOXN3O00409 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC17.01■□□□□ 0.31
FOXN3O00409 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC17.01■□□□□ 0.31
FOXN3O00409 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC17.01■□□□□ 0.31
FOXN3O00409 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
FOXN3O00409 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC17.01■□□□□ 0.31
FOXN3O00409 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
FOXN3O00409 MTND6P24-201ENST00000440466 518 ntBASIC17.01■□□□□ 0.31
FOXN3O00409 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
FOXN3O00409 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC17.01■□□□□ 0.31
FOXN3O00409 AL512356.2-201ENST00000546955 174 ntBASIC17.01■□□□□ 0.31
FOXN3O00409 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC17.01■□□□□ 0.31
FOXN3O00409 SPIB-207ENST00000597855 564 ntTSL 4 BASIC17.01■□□□□ 0.31
FOXN3O00409 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC17.01■□□□□ 0.31
FOXN3O00409 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
FOXN3O00409 MIR6080-201ENST00000617359 66 ntBASIC17.01■□□□□ 0.31
FOXN3O00409 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC17.01■□□□□ 0.31
FOXN3O00409 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
FOXN3O00409 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC17.01■□□□□ 0.31
FOXN3O00409 AL607033.1-201ENST00000623900 1599 ntBASIC17.01■□□□□ 0.31
FOXN3O00409 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC17.01■□□□□ 0.31
FOXN3O00409 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
FOXN3O00409 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
FOXN3O00409 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC17.01■□□□□ 0.31
FOXN3O00409 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC17.01■□□□□ 0.31
FOXN3O00409 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC17.01■□□□□ 0.31
FOXN3O00409 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
FOXN3O00409 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
FOXN3O00409 AC112693.3-201ENST00000624819 1983 ntBASIC17■□□□□ 0.31
FOXN3O00409 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC17■□□□□ 0.31
FOXN3O00409 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
FOXN3O00409 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC17■□□□□ 0.31
FOXN3O00409 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
FOXN3O00409 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC17■□□□□ 0.31
FOXN3O00409 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
FOXN3O00409 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
FOXN3O00409 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
FOXN3O00409 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
FOXN3O00409 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
FOXN3O00409 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
FOXN3O00409 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
FOXN3O00409 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC17■□□□□ 0.31
FOXN3O00409 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
FOXN3O00409 KRT18P13-201ENST00000400056 1290 ntBASIC17■□□□□ 0.31
FOXN3O00409 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC17■□□□□ 0.31
FOXN3O00409 AC136604.1-201ENST00000418535 575 ntBASIC17■□□□□ 0.31
FOXN3O00409 DNAJB3-202ENST00000449667 1266 ntBASIC17■□□□□ 0.31
FOXN3O00409 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC17■□□□□ 0.31
FOXN3O00409 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC17■□□□□ 0.31
FOXN3O00409 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC17■□□□□ 0.31
FOXN3O00409 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
FOXN3O00409 HLA-J-203ENST00000494367 1087 ntBASIC17■□□□□ 0.31
FOXN3O00409 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC17■□□□□ 0.31
FOXN3O00409 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC17■□□□□ 0.31
FOXN3O00409 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC17■□□□□ 0.31
FOXN3O00409 SNHG9-202ENST00000564014 471 ntBASIC17■□□□□ 0.31
FOXN3O00409 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
FOXN3O00409 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
FOXN3O00409 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC17■□□□□ 0.31
FOXN3O00409 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC17■□□□□ 0.31
FOXN3O00409 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC17■□□□□ 0.31
FOXN3O00409 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms