Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC15.37■□□□□ 0.05
PPP4R4Q6NUP7 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC15.37■□□□□ 0.05
PPP4R4Q6NUP7 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
PPP4R4Q6NUP7 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
PPP4R4Q6NUP7 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
PPP4R4Q6NUP7 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC15.36■□□□□ 0.05
PPP4R4Q6NUP7 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
PPP4R4Q6NUP7 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC15.36■□□□□ 0.05
PPP4R4Q6NUP7 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC15.36■□□□□ 0.05
PPP4R4Q6NUP7 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
PPP4R4Q6NUP7 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC15.36■□□□□ 0.05
PPP4R4Q6NUP7 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
PPP4R4Q6NUP7 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
PPP4R4Q6NUP7 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC15.36■□□□□ 0.05
PPP4R4Q6NUP7 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
PPP4R4Q6NUP7 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC15.36■□□□□ 0.05
PPP4R4Q6NUP7 CD63-204ENST00000546939 779 ntTSL 3 BASIC15.36■□□□□ 0.05
PPP4R4Q6NUP7 CD63-210ENST00000550776 870 ntTSL 5 BASIC15.36■□□□□ 0.05
PPP4R4Q6NUP7 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC15.36■□□□□ 0.05
PPP4R4Q6NUP7 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC15.36■□□□□ 0.05
PPP4R4Q6NUP7 TCAP-202ENST00000578283 583 ntTSL 5 BASIC15.36■□□□□ 0.05
PPP4R4Q6NUP7 MIR4492-201ENST00000581627 80 ntBASIC15.36■□□□□ 0.05
PPP4R4Q6NUP7 AC027601.4-201ENST00000611259 610 ntBASIC15.36■□□□□ 0.05
PPP4R4Q6NUP7 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC15.36■□□□□ 0.05
PPP4R4Q6NUP7 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC15.36■□□□□ 0.05
PPP4R4Q6NUP7 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
PPP4R4Q6NUP7 PCDHA11-201ENST00000398640 6115 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
PPP4R4Q6NUP7 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
PPP4R4Q6NUP7 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
PPP4R4Q6NUP7 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC15.36■□□□□ 0.05
PPP4R4Q6NUP7 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
PPP4R4Q6NUP7 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC15.36■□□□□ 0.05
PPP4R4Q6NUP7 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC15.36■□□□□ 0.05
PPP4R4Q6NUP7 TOP3BP1-201ENST00000420768 1380 ntBASIC15.36■□□□□ 0.05
PPP4R4Q6NUP7 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC15.36■□□□□ 0.05
PPP4R4Q6NUP7 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC15.35■□□□□ 0.05
PPP4R4Q6NUP7 POLL-206ENST00000370172 2308 ntTSL 2 BASIC15.35■□□□□ 0.05
PPP4R4Q6NUP7 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
PPP4R4Q6NUP7 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC15.35■□□□□ 0.05
PPP4R4Q6NUP7 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
PPP4R4Q6NUP7 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC15.35■□□□□ 0.05
PPP4R4Q6NUP7 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
PPP4R4Q6NUP7 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC15.35■□□□□ 0.05
PPP4R4Q6NUP7 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
PPP4R4Q6NUP7 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC15.35■□□□□ 0.05
PPP4R4Q6NUP7 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
PPP4R4Q6NUP7 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC15.35■□□□□ 0.05
PPP4R4Q6NUP7 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
PPP4R4Q6NUP7 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC15.35■□□□□ 0.05
PPP4R4Q6NUP7 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
PPP4R4Q6NUP7 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
PPP4R4Q6NUP7 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC15.35■□□□□ 0.05
PPP4R4Q6NUP7 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
PPP4R4Q6NUP7 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC15.35■□□□□ 0.05
PPP4R4Q6NUP7 MIR574-201ENST00000385209 96 ntBASIC15.35■□□□□ 0.05
PPP4R4Q6NUP7 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC15.35■□□□□ 0.05
PPP4R4Q6NUP7 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC15.35■□□□□ 0.05
PPP4R4Q6NUP7 CRCP-205ENST00000431089 942 ntTSL 2 BASIC15.35■□□□□ 0.05
PPP4R4Q6NUP7 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC15.35■□□□□ 0.05
PPP4R4Q6NUP7 AC034105.1-201ENST00000563488 319 ntBASIC15.35■□□□□ 0.05
PPP4R4Q6NUP7 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC15.35■□□□□ 0.05
PPP4R4Q6NUP7 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC15.35■□□□□ 0.05
PPP4R4Q6NUP7 AC008667.4-201ENST00000607370 168 ntBASIC15.35■□□□□ 0.05
PPP4R4Q6NUP7 GGTLC5P-201ENST00000617623 998 ntBASIC15.35■□□□□ 0.05
PPP4R4Q6NUP7 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
PPP4R4Q6NUP7 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
PPP4R4Q6NUP7 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC15.35■□□□□ 0.05
PPP4R4Q6NUP7 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC15.35■□□□□ 0.05
PPP4R4Q6NUP7 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC15.35■□□□□ 0.05
PPP4R4Q6NUP7 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
PPP4R4Q6NUP7 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
PPP4R4Q6NUP7 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
PPP4R4Q6NUP7 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC15.35■□□□□ 0.05
PPP4R4Q6NUP7 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
PPP4R4Q6NUP7 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
PPP4R4Q6NUP7 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
PPP4R4Q6NUP7 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
PPP4R4Q6NUP7 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
PPP4R4Q6NUP7 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC15.35■□□□□ 0.05
PPP4R4Q6NUP7 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
PPP4R4Q6NUP7 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
PPP4R4Q6NUP7 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
PPP4R4Q6NUP7 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC15.35■□□□□ 0.05
PPP4R4Q6NUP7 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
PPP4R4Q6NUP7 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PPP4R4Q6NUP7 GRK6P1-201ENST00000400595 1711 ntBASIC15.34■□□□□ 0.05
PPP4R4Q6NUP7 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
PPP4R4Q6NUP7 JADE2-203ENST00000395003 6465 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
PPP4R4Q6NUP7 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PPP4R4Q6NUP7 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC15.34■□□□□ 0.05
PPP4R4Q6NUP7 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PPP4R4Q6NUP7 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PPP4R4Q6NUP7 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC15.34■□□□□ 0.05
PPP4R4Q6NUP7 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PPP4R4Q6NUP7 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PPP4R4Q6NUP7 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
PPP4R4Q6NUP7 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC15.34■□□□□ 0.05
PPP4R4Q6NUP7 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC15.34■□□□□ 0.05
PPP4R4Q6NUP7 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
PPP4R4Q6NUP7 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 54.6 ms