Protein–RNA interactions for Protein: P59780

AP3S2, AP-3 complex subunit sigma-2, humanhuman

Predictions only

Length 193 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP3S2P59780 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
AP3S2P59780 TMEM38A-201ENST00000187762 2649 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
AP3S2P59780 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC13.74□□□□□ -0.21
AP3S2P59780 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC13.74□□□□□ -0.21
AP3S2P59780 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
AP3S2P59780 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
AP3S2P59780 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
AP3S2P59780 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC13.74□□□□□ -0.21
AP3S2P59780 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC13.74□□□□□ -0.21
AP3S2P59780 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
AP3S2P59780 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC13.74□□□□□ -0.21
AP3S2P59780 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
AP3S2P59780 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
AP3S2P59780 KRT18P38-201ENST00000449496 1282 ntBASIC13.74□□□□□ -0.21
AP3S2P59780 AC005412.3-201ENST00000580309 715 ntBASIC13.74□□□□□ -0.21
AP3S2P59780 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
AP3S2P59780 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
AP3S2P59780 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC13.74□□□□□ -0.21
AP3S2P59780 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
AP3S2P59780 MAGI1-218ENST00000621418 6225 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
AP3S2P59780 VTI1B-204ENST00000554659 5351 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
AP3S2P59780 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
AP3S2P59780 NRXN1-222ENST00000625672 8113 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
AP3S2P59780 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
AP3S2P59780 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
AP3S2P59780 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
AP3S2P59780 NAALADL1-204ENST00000358658 2699 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
AP3S2P59780 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
AP3S2P59780 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC13.74□□□□□ -0.21
AP3S2P59780 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
AP3S2P59780 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
AP3S2P59780 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
AP3S2P59780 GOLIM4-202ENST00000470487 4373 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
AP3S2P59780 E2F7-201ENST00000322886 5740 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
AP3S2P59780 RAB2A-201ENST00000262646 3848 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
AP3S2P59780 ZMYND15-202ENST00000433935 2411 ntAPPRIS P1 TSL 2 BASIC13.73□□□□□ -0.21
AP3S2P59780 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
AP3S2P59780 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
AP3S2P59780 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC13.73□□□□□ -0.21
AP3S2P59780 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
AP3S2P59780 FOXP1-202ENST00000318789 7114 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
AP3S2P59780 FOXP1-222ENST00000615603 7140 ntTSL 5 BASIC13.73□□□□□ -0.21
AP3S2P59780 AC009690.1-201ENST00000379915 4374 ntAPPRIS P1 TSL 2 BASIC13.73□□□□□ -0.21
AP3S2P59780 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
AP3S2P59780 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC13.73□□□□□ -0.21
AP3S2P59780 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC13.73□□□□□ -0.21
AP3S2P59780 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
AP3S2P59780 ILF3-AS1-201ENST00000591501 1983 ntBASIC13.73□□□□□ -0.21
AP3S2P59780 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
AP3S2P59780 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
AP3S2P59780 DENND3-211ENST00000519811 5482 ntAPPRIS ALT2 TSL 5 BASIC13.73□□□□□ -0.21
AP3S2P59780 FGFR1-202ENST00000335922 4157 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
AP3S2P59780 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC13.73□□□□□ -0.21
AP3S2P59780 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
AP3S2P59780 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC13.73□□□□□ -0.21
AP3S2P59780 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
AP3S2P59780 TSPY20P-201ENST00000450910 630 ntBASIC13.73□□□□□ -0.21
AP3S2P59780 MINOS1P3-201ENST00000457048 203 ntBASIC13.73□□□□□ -0.21
AP3S2P59780 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC13.73□□□□□ -0.21
AP3S2P59780 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC13.73□□□□□ -0.21
AP3S2P59780 AC145285.6-201ENST00000604632 637 ntBASIC13.73□□□□□ -0.21
AP3S2P59780 LINC01023-201ENST00000606054 436 ntBASIC13.73□□□□□ -0.21
AP3S2P59780 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC13.73□□□□□ -0.21
AP3S2P59780 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC13.73□□□□□ -0.21
AP3S2P59780 LAMB2-202ENST00000418109 5674 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
AP3S2P59780 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
AP3S2P59780 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
AP3S2P59780 ZNF541-203ENST00000391901 4580 ntAPPRIS P2 TSL 5 BASIC13.73□□□□□ -0.21
AP3S2P59780 SLC25A29-208ENST00000554912 5169 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
AP3S2P59780 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
AP3S2P59780 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
AP3S2P59780 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
AP3S2P59780 PRPF8-205ENST00000572621 7445 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
AP3S2P59780 AP001282.1-201ENST00000531301 1499 ntBASIC13.73□□□□□ -0.21
AP3S2P59780 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
AP3S2P59780 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
AP3S2P59780 CLCN1-201ENST00000343257 3172 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
AP3S2P59780 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
AP3S2P59780 ZNF395-201ENST00000344423 4808 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
AP3S2P59780 STAB1-201ENST00000321725 7928 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
AP3S2P59780 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
AP3S2P59780 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC13.72□□□□□ -0.21
AP3S2P59780 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
AP3S2P59780 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
AP3S2P59780 PAG1-201ENST00000220597 10744 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
AP3S2P59780 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
AP3S2P59780 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
AP3S2P59780 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
AP3S2P59780 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
AP3S2P59780 EMC10-201ENST00000334976 9446 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
AP3S2P59780 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC13.72□□□□□ -0.21
AP3S2P59780 DPYSL2-204ENST00000521913 4805 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
AP3S2P59780 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC13.72□□□□□ -0.21
AP3S2P59780 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
AP3S2P59780 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC13.72□□□□□ -0.21
AP3S2P59780 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
AP3S2P59780 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC13.72□□□□□ -0.21
AP3S2P59780 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
AP3S2P59780 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
AP3S2P59780 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 63.6 ms