Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC14.43□□□□□ -0.1
HIF3AQ9Y2N7 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC14.43□□□□□ -0.1
HIF3AQ9Y2N7 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HIF3AQ9Y2N7 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC14.43□□□□□ -0.1
HIF3AQ9Y2N7 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC14.43□□□□□ -0.1
HIF3AQ9Y2N7 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC14.43□□□□□ -0.1
HIF3AQ9Y2N7 AC084121.4-201ENST00000641598 221 ntBASIC14.43□□□□□ -0.1
HIF3AQ9Y2N7 AF228730.8-201ENST00000642140 221 ntBASIC14.43□□□□□ -0.1
HIF3AQ9Y2N7 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
HIF3AQ9Y2N7 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HIF3AQ9Y2N7 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC14.43□□□□□ -0.1
HIF3AQ9Y2N7 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HIF3AQ9Y2N7 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HIF3AQ9Y2N7 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
HIF3AQ9Y2N7 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
HIF3AQ9Y2N7 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
HIF3AQ9Y2N7 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
HIF3AQ9Y2N7 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HIF3AQ9Y2N7 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
HIF3AQ9Y2N7 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
HIF3AQ9Y2N7 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC14.43□□□□□ -0.1
HIF3AQ9Y2N7 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HIF3AQ9Y2N7 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC14.43□□□□□ -0.1
HIF3AQ9Y2N7 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
HIF3AQ9Y2N7 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
HIF3AQ9Y2N7 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HIF3AQ9Y2N7 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC14.42□□□□□ -0.1
HIF3AQ9Y2N7 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC14.42□□□□□ -0.1
HIF3AQ9Y2N7 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HIF3AQ9Y2N7 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
HIF3AQ9Y2N7 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
HIF3AQ9Y2N7 THSD4-202ENST00000355327 9200 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
HIF3AQ9Y2N7 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HIF3AQ9Y2N7 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC14.42□□□□□ -0.1
HIF3AQ9Y2N7 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
HIF3AQ9Y2N7 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HIF3AQ9Y2N7 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HIF3AQ9Y2N7 PMP22-202ENST00000395936 816 ntTSL 3 BASIC14.42□□□□□ -0.1
HIF3AQ9Y2N7 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
HIF3AQ9Y2N7 GATB-205ENST00000508611 605 ntTSL 2 BASIC14.42□□□□□ -0.1
HIF3AQ9Y2N7 IGHV3-62-201ENST00000520057 340 ntBASIC14.42□□□□□ -0.1
HIF3AQ9Y2N7 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC14.42□□□□□ -0.1
HIF3AQ9Y2N7 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC14.42□□□□□ -0.1
HIF3AQ9Y2N7 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC14.42□□□□□ -0.1
HIF3AQ9Y2N7 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HIF3AQ9Y2N7 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC14.42□□□□□ -0.1
HIF3AQ9Y2N7 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
HIF3AQ9Y2N7 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
HIF3AQ9Y2N7 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC14.42□□□□□ -0.1
HIF3AQ9Y2N7 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
HIF3AQ9Y2N7 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC14.42□□□□□ -0.1
HIF3AQ9Y2N7 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
HIF3AQ9Y2N7 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC14.42□□□□□ -0.1
HIF3AQ9Y2N7 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC14.42□□□□□ -0.1
HIF3AQ9Y2N7 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
HIF3AQ9Y2N7 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HIF3AQ9Y2N7 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HIF3AQ9Y2N7 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
HIF3AQ9Y2N7 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
HIF3AQ9Y2N7 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC14.42□□□□□ -0.1
HIF3AQ9Y2N7 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HIF3AQ9Y2N7 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC14.42□□□□□ -0.1
HIF3AQ9Y2N7 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
HIF3AQ9Y2N7 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
HIF3AQ9Y2N7 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
HIF3AQ9Y2N7 REXO1L1P-202ENST00000608646 1974 ntBASIC14.42□□□□□ -0.1
HIF3AQ9Y2N7 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
HIF3AQ9Y2N7 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC14.42□□□□□ -0.1
HIF3AQ9Y2N7 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
HIF3AQ9Y2N7 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
HIF3AQ9Y2N7 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC14.41□□□□□ -0.1
HIF3AQ9Y2N7 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
HIF3AQ9Y2N7 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
HIF3AQ9Y2N7 FLII-221ENST00000578558 2377 ntTSL 5 BASIC14.41□□□□□ -0.1
HIF3AQ9Y2N7 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC14.41□□□□□ -0.1
HIF3AQ9Y2N7 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
HIF3AQ9Y2N7 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC14.41□□□□□ -0.1
HIF3AQ9Y2N7 POM121-202ENST00000395270 7011 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
HIF3AQ9Y2N7 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
HIF3AQ9Y2N7 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
HIF3AQ9Y2N7 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC14.41□□□□□ -0.1
HIF3AQ9Y2N7 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC14.41□□□□□ -0.1
HIF3AQ9Y2N7 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
HIF3AQ9Y2N7 AC136621.1-201ENST00000624017 2304 ntBASIC14.41□□□□□ -0.1
HIF3AQ9Y2N7 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
HIF3AQ9Y2N7 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
HIF3AQ9Y2N7 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
HIF3AQ9Y2N7 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
HIF3AQ9Y2N7 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
HIF3AQ9Y2N7 MIR574-201ENST00000385209 96 ntBASIC14.41□□□□□ -0.1
HIF3AQ9Y2N7 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC14.41□□□□□ -0.1
HIF3AQ9Y2N7 MIR940-201ENST00000401276 94 ntBASIC14.41□□□□□ -0.1
HIF3AQ9Y2N7 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC14.41□□□□□ -0.1
HIF3AQ9Y2N7 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC14.41□□□□□ -0.1
HIF3AQ9Y2N7 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC14.41□□□□□ -0.1
HIF3AQ9Y2N7 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC14.41□□□□□ -0.1
HIF3AQ9Y2N7 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC14.41□□□□□ -0.1
HIF3AQ9Y2N7 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC14.41□□□□□ -0.1
HIF3AQ9Y2N7 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC14.41□□□□□ -0.1
HIF3AQ9Y2N7 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC14.41□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms