Protein–RNA interactions for Protein: Q9NWW5

CLN6, Ceroid-lipofuscinosis neuronal protein 6, humanhuman

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6Q9NWW5 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC14.62□□□□□ -0.07
CLN6Q9NWW5 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
CLN6Q9NWW5 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC14.62□□□□□ -0.07
CLN6Q9NWW5 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC14.62□□□□□ -0.07
CLN6Q9NWW5 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
CLN6Q9NWW5 WDR33-201ENST00000322313 9471 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CLN6Q9NWW5 AC092127.1-201ENST00000567093 3455 ntBASIC14.62□□□□□ -0.07
CLN6Q9NWW5 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
CLN6Q9NWW5 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
CLN6Q9NWW5 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC14.62□□□□□ -0.07
CLN6Q9NWW5 RAB17-203ENST00000409576 466 ntTSL 3 BASIC14.62□□□□□ -0.07
CLN6Q9NWW5 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
CLN6Q9NWW5 RPS15P9-201ENST00000494093 319 ntBASIC14.62□□□□□ -0.07
CLN6Q9NWW5 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
CLN6Q9NWW5 KRT18P31-201ENST00000506277 1292 ntBASIC14.62□□□□□ -0.07
CLN6Q9NWW5 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC14.62□□□□□ -0.07
CLN6Q9NWW5 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC14.62□□□□□ -0.07
CLN6Q9NWW5 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
CLN6Q9NWW5 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC14.62□□□□□ -0.07
CLN6Q9NWW5 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC14.62□□□□□ -0.07
CLN6Q9NWW5 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC14.62□□□□□ -0.07
CLN6Q9NWW5 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC14.62□□□□□ -0.07
CLN6Q9NWW5 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
CLN6Q9NWW5 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC14.62□□□□□ -0.07
CLN6Q9NWW5 PIK3CG-201ENST00000359195 5377 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CLN6Q9NWW5 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
CLN6Q9NWW5 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
CLN6Q9NWW5 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CLN6Q9NWW5 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
CLN6Q9NWW5 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
CLN6Q9NWW5 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CLN6Q9NWW5 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
CLN6Q9NWW5 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
CLN6Q9NWW5 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC14.62□□□□□ -0.07
CLN6Q9NWW5 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC14.62□□□□□ -0.07
CLN6Q9NWW5 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC14.62□□□□□ -0.07
CLN6Q9NWW5 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
CLN6Q9NWW5 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
CLN6Q9NWW5 GPAT4-201ENST00000396987 6298 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CLN6Q9NWW5 IRF4-201ENST00000380956 5331 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CLN6Q9NWW5 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC14.61□□□□□ -0.07
CLN6Q9NWW5 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
CLN6Q9NWW5 SNX30-201ENST00000374232 7622 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
CLN6Q9NWW5 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
CLN6Q9NWW5 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CLN6Q9NWW5 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CLN6Q9NWW5 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC14.61□□□□□ -0.07
CLN6Q9NWW5 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CLN6Q9NWW5 DNAJC27-201ENST00000264711 4992 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CLN6Q9NWW5 HELZ2-204ENST00000467148 8064 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CLN6Q9NWW5 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CLN6Q9NWW5 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC14.61□□□□□ -0.07
CLN6Q9NWW5 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC14.61□□□□□ -0.07
CLN6Q9NWW5 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
CLN6Q9NWW5 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
CLN6Q9NWW5 TNRC18-203ENST00000399537 10572 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
CLN6Q9NWW5 TNRC18-205ENST00000430969 10562 ntAPPRIS P2 TSL 5 BASIC14.61□□□□□ -0.07
CLN6Q9NWW5 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CLN6Q9NWW5 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CLN6Q9NWW5 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC14.61□□□□□ -0.07
CLN6Q9NWW5 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CLN6Q9NWW5 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CLN6Q9NWW5 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC14.61□□□□□ -0.07
CLN6Q9NWW5 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC14.61□□□□□ -0.07
CLN6Q9NWW5 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC14.61□□□□□ -0.07
CLN6Q9NWW5 MIR3652-201ENST00000579335 131 ntBASIC14.61□□□□□ -0.07
CLN6Q9NWW5 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC14.61□□□□□ -0.07
CLN6Q9NWW5 CYGB-205ENST00000590175 830 ntTSL 3 BASIC14.61□□□□□ -0.07
CLN6Q9NWW5 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC14.61□□□□□ -0.07
CLN6Q9NWW5 AC107918.4-202ENST00000641623 219 ntBASIC14.61□□□□□ -0.07
CLN6Q9NWW5 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
CLN6Q9NWW5 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC14.61□□□□□ -0.07
CLN6Q9NWW5 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CLN6Q9NWW5 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC14.61□□□□□ -0.07
CLN6Q9NWW5 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CLN6Q9NWW5 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
CLN6Q9NWW5 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC14.61□□□□□ -0.07
CLN6Q9NWW5 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CLN6Q9NWW5 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
CLN6Q9NWW5 MARS-233ENST00000628866 2583 ntTSL 5 BASIC14.61□□□□□ -0.07
CLN6Q9NWW5 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CLN6Q9NWW5 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
CLN6Q9NWW5 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC14.61□□□□□ -0.07
CLN6Q9NWW5 COL7A1-201ENST00000328333 9276 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CLN6Q9NWW5 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CLN6Q9NWW5 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC14.61□□□□□ -0.07
CLN6Q9NWW5 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC14.61□□□□□ -0.07
CLN6Q9NWW5 MYH7-201ENST00000355349 6087 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CLN6Q9NWW5 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC14.61□□□□□ -0.07
CLN6Q9NWW5 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC14.6□□□□□ -0.07
CLN6Q9NWW5 RER1-203ENST00000378513 3000 ntTSL 3 BASIC14.6□□□□□ -0.07
CLN6Q9NWW5 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC14.6□□□□□ -0.07
CLN6Q9NWW5 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CLN6Q9NWW5 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC14.6□□□□□ -0.07
CLN6Q9NWW5 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC14.6□□□□□ -0.07
CLN6Q9NWW5 AC138969.2-201ENST00000532739 9932 ntBASIC14.6□□□□□ -0.07
CLN6Q9NWW5 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC14.6□□□□□ -0.07
CLN6Q9NWW5 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
CLN6Q9NWW5 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC14.6□□□□□ -0.07
CLN6Q9NWW5 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC14.6□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 53.3 ms