Protein–RNA interactions for Protein: Q6ZN17

LIN28B, Protein lin-28 homolog B, humanhuman

Known RBP eCLIP

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIN28BQ6ZN17 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC24.54■■□□□ 1.522e-7■□□□□ 10.1
LIN28BQ6ZN17 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC19.57■□□□□ 0.722e-7■□□□□ 10.1
LIN28BQ6ZN17 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC19.57■□□□□ 0.722e-7■□□□□ 10.1
LIN28BQ6ZN17 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.532e-7■□□□□ 10.1
LIN28BQ6ZN17 PYCR2-202ENST00000446534 1341 ntTSL 217.21■□□□□ 0.352e-7■□□□□ 10.1
LIN28BQ6ZN17 PYCR2-205ENST00000472798 422 ntTSL 215.35■□□□□ 0.052e-7■□□□□ 10.1
LIN28BQ6ZN17 PYCR2-206ENST00000478402 3149 ntTSL 214.88□□□□□ -0.032e-7■□□□□ 10.1
LIN28BQ6ZN17 PYCR2-207ENST00000489681 597 ntTSL 310.81□□□□□ -0.682e-7■□□□□ 10.1
LIN28BQ6ZN17 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC28.66■■■□□ 2.188e-7■□□□□ 10.1
LIN28BQ6ZN17 FBRSL1-206ENST00000542306 1246 ntTSL 522.67■■□□□ 1.228e-7■□□□□ 10.1
LIN28BQ6ZN17 FBRSL1-203ENST00000537804 261 ntTSL 515.49■□□□□ 0.078e-7■□□□□ 10.1
LIN28BQ6ZN17 AK2-202ENST00000373449 3586 ntAPPRIS ALT1 TSL 1 (best) BASIC10.42□□□□□ -0.743e-8■□□□□ 10.1
LIN28BQ6ZN17 AK2-215ENST00000629371 3576 ntTSL 3 BASIC9.04□□□□□ -0.963e-8■□□□□ 10.1
LIN28BQ6ZN17 FN1-226ENST00000496542 695 ntTSL 214.83□□□□□ -0.042e-66■□□□□ 10.1
LIN28BQ6ZN17 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC19.67■□□□□ 0.746e-8■□□□□ 10.1
LIN28BQ6ZN17 IDS-206ENST00000466323 1529 ntTSL 1 (best)18.98■□□□□ 0.636e-8■□□□□ 10.1
LIN28BQ6ZN17 IDS-207ENST00000490775 945 ntTSL 311.63□□□□□ -0.556e-8■□□□□ 10.1
LIN28BQ6ZN17 AC244197.3-201ENST00000422081 2635 ntAPPRIS P1 TSL 2 BASIC11.45□□□□□ -0.586e-8■□□□□ 10.1
LIN28BQ6ZN17 AC244197.3-202ENST00000441880 416 ntTSL 211.35□□□□□ -0.596e-8■□□□□ 10.1
LIN28BQ6ZN17 IDS-204ENST00000464251 959 ntTSL 57.78□□□□□ -1.166e-8■□□□□ 10.1
LIN28BQ6ZN17 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC20.15■□□□□ 0.821e-323■□□□□ 10.1
LIN28BQ6ZN17 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.781e-323■□□□□ 10.1
LIN28BQ6ZN17 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC19.91■□□□□ 0.781e-323■□□□□ 10.1
LIN28BQ6ZN17 INS-IGF2-201ENST00000356578 1706 ntTSL 519.19■□□□□ 0.661e-323■□□□□ 10.1
LIN28BQ6ZN17 IGF2-201ENST00000381389 1023 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.11e-323■□□□□ 10.1
LIN28BQ6ZN17 INS-IGF2-205ENST00000641326 2861 ntAPPRIS P1 BASIC11.91□□□□□ -0.51e-323■□□□□ 10.1
LIN28BQ6ZN17 RPA1-202ENST00000570451 630 ntTSL 324.08■■□□□ 1.452e-7■□□□□ 10.1
LIN28BQ6ZN17 PRKRA-202ENST00000424699 1616 ntTSL 223.86■■□□□ 1.412e-7■□□□□ 10.1
LIN28BQ6ZN17 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.112e-7■□□□□ 10.1
LIN28BQ6ZN17 RPA1-203ENST00000571058 577 ntTSL 419.51■□□□□ 0.712e-7■□□□□ 10.1
LIN28BQ6ZN17 SPAG9-206ENST00000506483 848 ntTSL 314.6□□□□□ -0.072e-7■□□□□ 10.1
LIN28BQ6ZN17 SMG7-214ENST00000508461 3985 ntAPPRIS ALT2 TSL 2 BASIC12.6□□□□□ -0.392e-7■□□□□ 10.1
LIN28BQ6ZN17 MDM2-222ENST00000523991 505 ntTSL 1 (best)10.23□□□□□ -0.772e-7■□□□□ 10.1
LIN28BQ6ZN17 MDM2-213ENST00000393417 1683 ntTSL 58.8□□□□□ -12e-7■□□□□ 10.1
LIN28BQ6ZN17 MDM2-211ENST00000393415 842 ntTSL 57.48□□□□□ -1.212e-7■□□□□ 10.1
LIN28BQ6ZN17 SPAG9-219ENST00000514613 2523 ntTSL 27.2□□□□□ -1.262e-7■□□□□ 10.1
LIN28BQ6ZN17 PRKRA-212ENST00000490501 1851 ntTSL 27.06□□□□□ -1.282e-7■□□□□ 10.1
LIN28BQ6ZN17 SPAG9-204ENST00000505173 2369 ntTSL 56.83□□□□□ -1.322e-7■□□□□ 10.1
LIN28BQ6ZN17 MDM2-225ENST00000539479 845 ntTSL 1 (best)6.68□□□□□ -1.342e-7■□□□□ 10.1
LIN28BQ6ZN17 MDM2-234ENST00000546048 363 ntTSL 55.74□□□□□ -1.492e-7■□□□□ 10.1
LIN28BQ6ZN17 MDM2-224ENST00000537182 1011 ntTSL 1 (best)5.59□□□□□ -1.512e-7■□□□□ 10.1
LIN28BQ6ZN17 MDM2-220ENST00000496959 897 ntTSL 1 (best)5.57□□□□□ -1.522e-7■□□□□ 10.1
LIN28BQ6ZN17 MDM2-201ENST00000258148 1361 ntAPPRIS ALT2 TSL 1 (best) BASIC5.05□□□□□ -1.62e-7■□□□□ 10.1
LIN28BQ6ZN17 MDM2-230ENST00000543323 427 ntTSL 1 (best)5.02□□□□□ -1.612e-7■□□□□ 10.1
LIN28BQ6ZN17 MDM2-228ENST00000542502 1127 ntTSL 1 (best)4.67□□□□□ -1.662e-7■□□□□ 10.1
LIN28BQ6ZN17 MDM2-203ENST00000299252 966 ntTSL 1 (best) BASIC4.27□□□□□ -1.732e-7■□□□□ 10.1
LIN28BQ6ZN17 MDM2-217ENST00000478070 692 ntTSL 1 (best) BASIC4.07□□□□□ -1.762e-7■□□□□ 10.1
LIN28BQ6ZN17 MDM2-226ENST00000540352 1315 ntTSL 1 (best)3.9□□□□□ -1.792e-7■□□□□ 10.1
LIN28BQ6ZN17 MDM2-218ENST00000481186 1056 ntTSL 53.85□□□□□ -1.792e-7■□□□□ 10.1
LIN28BQ6ZN17 MDM2-223ENST00000536089 1181 ntTSL 1 (best)3.85□□□□□ -1.792e-7■□□□□ 10.1
LIN28BQ6ZN17 MDM2-207ENST00000360430 891 ntTSL 1 (best) BASIC3.51□□□□□ -1.852e-7■□□□□ 10.1
LIN28BQ6ZN17 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC3.36□□□□□ -1.872e-7■□□□□ 10.1
LIN28BQ6ZN17 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC3.13□□□□□ -1.912e-7■□□□□ 10.1
LIN28BQ6ZN17 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC3.13□□□□□ -1.912e-7■□□□□ 10.1
LIN28BQ6ZN17 MDM2-233ENST00000545204 398 ntTSL 5 BASIC3.13□□□□□ -1.912e-7■□□□□ 10.1
LIN28BQ6ZN17 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC2.75□□□□□ -1.972e-7■□□□□ 10.1
LIN28BQ6ZN17 RPA1-204ENST00000571725 413 ntTSL 52.67□□□□□ -1.982e-7■□□□□ 10.1
LIN28BQ6ZN17 MDM2-232ENST00000544561 213 ntTSL 5 BASIC2.27□□□□□ -2.052e-7■□□□□ 10.1
LIN28BQ6ZN17 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC2.23□□□□□ -2.052e-7■□□□□ 10.1
LIN28BQ6ZN17 TRIM28-215ENST00000601150 915 ntTSL 318.84■□□□□ 0.615e-10■□□□□ 10.1
LIN28BQ6ZN17 TRIM28-209ENST00000597423 733 ntTSL 316.29■□□□□ 0.25e-10■□□□□ 10.1
LIN28BQ6ZN17 TRIM28-212ENST00000597995 702 ntTSL 214.5□□□□□ -0.095e-10■□□□□ 10.1
LIN28BQ6ZN17 TRIM28-208ENST00000597172 577 ntTSL 210.4□□□□□ -0.745e-10■□□□□ 10.1
LIN28BQ6ZN17 C2-213ENST00000484636 542 ntTSL 417.04■□□□□ 0.321e-7■□□□□ 10.1
LIN28BQ6ZN17 C2-203ENST00000411571 773 ntTSL 515.72■□□□□ 0.111e-7■□□□□ 10.1
LIN28BQ6ZN17 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC15.63■□□□□ 0.091e-7■□□□□ 10.1
LIN28BQ6ZN17 C2-207ENST00000447952 837 ntTSL 315.47■□□□□ 0.071e-7■□□□□ 10.1
LIN28BQ6ZN17 C2-208ENST00000452202 539 ntTSL 414.65□□□□□ -0.061e-7■□□□□ 10.1
LIN28BQ6ZN17 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.332e-6■□□□□ 10.1
LIN28BQ6ZN17 GNAS-220ENST00000461152 278 ntTSL 521.02■□□□□ 0.963e-6■□□□□ 10.1
LIN28BQ6ZN17 GNAS-221ENST00000462499 492 ntTSL 216.57■□□□□ 0.243e-6■□□□□ 10.1
LIN28BQ6ZN17 GNAS-219ENST00000453292 632 ntTSL 514.63□□□□□ -0.073e-6■□□□□ 10.1
LIN28BQ6ZN17 GNAS-242ENST00000483387 593 ntTSL 29.83□□□□□ -0.843e-6■□□□□ 10.1
LIN28BQ6ZN17 ACTR3-203ENST00000443297 566 ntTSL 415.52■□□□□ 0.082e-7■□□□□ 10.1
LIN28BQ6ZN17 NCL-207ENST00000461347 3967 ntTSL 213.71□□□□□ -0.212e-6■□□□□ 10.1
LIN28BQ6ZN17 NCL-201ENST00000322723 4034 ntAPPRIS P1 TSL 2 BASIC11.92□□□□□ -0.52e-6■□□□□ 10.1
LIN28BQ6ZN17 APOH-203ENST00000581797 748 ntTSL 37.75□□□□□ -1.173e-43■□□□□ 10.1
LIN28BQ6ZN17 APOH-202ENST00000577982 707 ntTSL 55.12□□□□□ -1.593e-43■□□□□ 10.1
LIN28BQ6ZN17 APOH-201ENST00000205948 1176 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.593e-43■□□□□ 10.1
LIN28BQ6ZN17 LSM3-201ENST00000306024 3815 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.659e-10■□□□□ 10.1
LIN28BQ6ZN17 NARS-211ENST00000590123 463 ntTSL 510.94□□□□□ -0.661e-8■□□□□ 10.1
LIN28BQ6ZN17 G3BP1-211ENST00000522666 783 ntTSL 313.09□□□□□ -0.313e-6■□□□□ 10
LIN28BQ6ZN17 SMAD4-217ENST00000611848 1648 ntTSL 59.71□□□□□ -0.854e-7■□□□□ 10
LIN28BQ6ZN17 SMAD4-212ENST00000591126 4970 ntTSL 1 (best)6.32□□□□□ -1.44e-7■□□□□ 10
LIN28BQ6ZN17 RPL15-212ENST00000490223 1785 ntTSL 220.88■□□□□ 0.932e-13■□□□□ 10
LIN28BQ6ZN17 RPL15-206ENST00000422218 588 ntTSL 419.88■□□□□ 0.772e-13■□□□□ 10
LIN28BQ6ZN17 RPL15-208ENST00000435882 1063 ntAPPRIS P1 TSL 2 BASIC15.04■□□□□ -02e-13■□□□□ 10
LIN28BQ6ZN17 RPL15-205ENST00000415719 830 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.032e-13■□□□□ 10
LIN28BQ6ZN17 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.042e-13■□□□□ 10
LIN28BQ6ZN17 RPL15-202ENST00000354811 820 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.262e-13■□□□□ 10
LIN28BQ6ZN17 RPL15-203ENST00000412097 562 ntTSL 512.44□□□□□ -0.422e-13■□□□□ 10
LIN28BQ6ZN17 RPL15-213ENST00000611050 2363 ntAPPRIS P1 TSL 4 BASIC12.36□□□□□ -0.432e-13■□□□□ 10
LIN28BQ6ZN17 RPL15-210ENST00000456530 2835 ntTSL 1 (best) BASIC11.96□□□□□ -0.492e-13■□□□□ 10
LIN28BQ6ZN17 RPL15-204ENST00000413699 2053 ntAPPRIS P1 TSL 2 BASIC11.9□□□□□ -0.512e-13■□□□□ 10
LIN28BQ6ZN17 RPL15-207ENST00000434031 650 ntTSL 511.29□□□□□ -0.62e-13■□□□□ 10
LIN28BQ6ZN17 RPL15-211ENST00000465786 1729 ntTSL 1 (best)10.47□□□□□ -0.732e-13■□□□□ 10
LIN28BQ6ZN17 RPL15-209ENST00000436146 1990 ntTSL 57.29□□□□□ -1.242e-13■□□□□ 10
LIN28BQ6ZN17 SERP1-201ENST00000239944 3171 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.164e-8■□□□□ 10
LIN28BQ6ZN17 SERP1-203ENST00000479209 3934 ntAPPRIS P1 TSL 2 BASIC11.72□□□□□ -0.534e-8■□□□□ 10
LIN28BQ6ZN17 SEC13-216ENST00000479868 2374 ntTSL 1 (best)13.13□□□□□ -0.319e-12■□□□□ 10
Retrieved 100 of 21,972 protein–RNA pairs in 745.9 ms