RNA–Protein interactions for RNA: ENST00000591126.5

SMAD4-212, Transcript of SMAD family member 4, humanhuman

TSL 1 (best)

Gene SMAD4, Length 4,970 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-212ENST00000591126 NISCHQ9Y2I1 1504 aa11.73□□□□□ -0.53
SMAD4-212ENST00000591126 DCAF8L2P0C7V8 631 aa11.41□□□□□ -0.58
SMAD4-212ENST00000591126 FAM9AQ8IZU1 332 aaPredicted RBP10.77□□□□□ -0.69
SMAD4-212ENST00000591126 ABCC9O60706 1549 aa10.31□□□□□ -0.76
SMAD4-212ENST00000591126 SUPT5HO00267 1087 aaKnown RBP10.18□□□□□ -0.78
SMAD4-212ENST00000591126 CCDC180Q9P1Z9 1646 aa10.17□□□□□ -0.78
SMAD4-212ENST00000591126 SHROOM4Q9ULL8 1493 aa10.15□□□□□ -0.78
SMAD4-212ENST00000591126 APLP2Q06481 763 aa10.11□□□□□ -0.79
SMAD4-212ENST00000591126 RB1CC1Q8TDY2 1594 aa10.03□□□□□ -0.8
SMAD4-212ENST00000591126 PABPN1Q86U42 306 aaKnown RBP eCLIP9.93□□□□□ -0.82
SMAD4-212ENST00000591126 NACADO15069 1562 aa9.93□□□□□ -0.82
SMAD4-212ENST00000591126 TRIM41Q8WV44 630 aa9.77□□□□□ -0.84
SMAD4-212ENST00000591126 SCRIBQ14160 1630 aa9.69□□□□□ -0.86
SMAD4-212ENST00000591126 NPM1P06748 294 aaKnown RBP eCLIP9.66□□□□□ -0.86
SMAD4-212ENST00000591126 ZCCHC6Q5VYS8 1495 aaKnown RBP9.66□□□□□ -0.86
SMAD4-212ENST00000591126 ATP1B4Q9UN42 357 aaPredicted RBP9.66□□□□□ -0.86
SMAD4-212ENST00000591126 MYT1LQ9UL68 1186 aa9.65□□□□□ -0.86
SMAD4-212ENST00000591126 UBTFP17480 764 aaKnown RBP9.65□□□□□ -0.86
SMAD4-212ENST00000591126 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.63□□□□□ -0.87
SMAD4-212ENST00000591126 HNRNPUL2Q1KMD3 747 aaKnown RBP9.63□□□□□ -0.87
SMAD4-212ENST00000591126 DCAF1Q9Y4B6 1507 aa9.63□□□□□ -0.87
SMAD4-212ENST00000591126 MYO15BQ96JP2 1530 aa9.62□□□□□ -0.87
SMAD4-212ENST00000591126 FBLN2P98095 1184 aa9.55□□□□□ -0.88
SMAD4-212ENST00000591126 ERCC6Q03468 1493 aa9.55□□□□□ -0.88
SMAD4-212ENST00000591126 CDK11AQ9UQ88 783 aaPredicted RBP9.51□□□□□ -0.89
SMAD4-212ENST00000591126 ESF1Q9H501 851 aaKnown RBP9.45□□□□□ -0.9
SMAD4-212ENST00000591126 BAZ1BQ9UIG0 1483 aaKnown RBP9.44□□□□□ -0.9
SMAD4-212ENST00000591126 PDS5BQ9NTI5 1447 aa9.43□□□□□ -0.9
SMAD4-212ENST00000591126 RANGAP1P46060 587 aaPredicted RBP9.42□□□□□ -0.9
SMAD4-212ENST00000591126 CHMP7Q8WUX9 453 aaPredicted RBP9.42□□□□□ -0.9
SMAD4-212ENST00000591126 EHMT2Q96KQ7 1210 aa9.41□□□□□ -0.9
SMAD4-212ENST00000591126 SMARCA2P51531 1590 aa9.4□□□□□ -0.9
SMAD4-212ENST00000591126 TTBK1Q5TCY1 1321 aaPredicted RBP9.39□□□□□ -0.91
SMAD4-212ENST00000591126 BAZ1AQ9NRL2 1556 aaPredicted RBP9.38□□□□□ -0.91
SMAD4-212ENST00000591126 CECR2Q9BXF3 1484 aa9.33□□□□□ -0.92
SMAD4-212ENST00000591126 ACIN1Q9UKV3 1341 aaKnown RBP9.31□□□□□ -0.92
SMAD4-212ENST00000591126 ABCC8Q09428 1581 aa9.25□□□□□ -0.93
SMAD4-212ENST00000591126 CSRNP3Q8WYN3 585 aa9.18□□□□□ -0.94
SMAD4-212ENST00000591126 EEA1Q15075 1411 aa9.18□□□□□ -0.94
SMAD4-212ENST00000591126 TRHP20396 242 aaPredicted RBP9.17□□□□□ -0.94
SMAD4-212ENST00000591126 ZEB1P37275 1124 aaPredicted RBP9.16□□□□□ -0.94
SMAD4-212ENST00000591126 WRNQ14191 1432 aaPredicted RBP eCLIP9.14□□□□□ -0.95
SMAD4-212ENST00000591126 CADPSQ9ULU8 1353 aa9.14□□□□□ -0.95
SMAD4-212ENST00000591126 KIF27Q86VH2 1401 aa9.14□□□□□ -0.95
SMAD4-212ENST00000591126 PELP1Q8IZL8 1130 aaKnown RBP9.13□□□□□ -0.95
SMAD4-212ENST00000591126 CARMIL2Q6F5E8 1435 aa9.13□□□□□ -0.95
SMAD4-212ENST00000591126 OSCARQ8IYS5 282 aa9.13□□□□□ -0.95
SMAD4-212ENST00000591126 PLEKHD1A6NEE1 506 aa9.13□□□□□ -0.95
SMAD4-212ENST00000591126 STAG3Q9UJ98 1225 aa9.13□□□□□ -0.95
SMAD4-212ENST00000591126 SLC24A1O60721 1099 aa9.12□□□□□ -0.95
SMAD4-212ENST00000591126 BCANQ96GW7 911 aa9.12□□□□□ -0.95
SMAD4-212ENST00000591126 CEP164Q9UPV0 1460 aa9.11□□□□□ -0.95
SMAD4-212ENST00000591126 RSF1Q96T23 1441 aaPredicted RBP9.09□□□□□ -0.95
SMAD4-212ENST00000591126 TSPY4P0CV99 314 aa9.08□□□□□ -0.96
SMAD4-212ENST00000591126 TSPY10P0CW01 314 aa9.08□□□□□ -0.96
SMAD4-212ENST00000591126 HDGFP51858 240 aaKnown RBP9.06□□□□□ -0.96
SMAD4-212ENST00000591126 NCAPD3P42695 1498 aa9.06□□□□□ -0.96
SMAD4-212ENST00000591126 AEBP2Q6ZN18 517 aaPredicted RBP9.05□□□□□ -0.96
SMAD4-212ENST00000591126 ATAD2BQ9ULI0 1458 aa9.04□□□□□ -0.96
SMAD4-212ENST00000591126 FAM50AQ14320 339 aaKnown RBP9.04□□□□□ -0.96
SMAD4-212ENST00000591126 CHIC1Q5VXU3 224 aa9.03□□□□□ -0.96
SMAD4-212ENST00000591126 TRIM52Q96A61 297 aa9.03□□□□□ -0.96
SMAD4-212ENST00000591126 ARID4BQ4LE39 1312 aaPredicted RBP9.03□□□□□ -0.96
SMAD4-212ENST00000591126 SOGA1O94964 1423 aa9□□□□□ -0.97
SMAD4-212ENST00000591126 ZNF777Q9ULD5 760 aaPredicted RBP9□□□□□ -0.97
SMAD4-212ENST00000591126 EIF4G1Q04637 1599 aaKnown RBP9□□□□□ -0.97
SMAD4-212ENST00000591126 CCER1Q8TC90 406 aaPredicted RBP8.99□□□□□ -0.97
SMAD4-212ENST00000591126 CLIP1P30622 1438 aa8.98□□□□□ -0.97
SMAD4-212ENST00000591126 TOP2AP11388 1531 aaKnown RBP8.97□□□□□ -0.97
SMAD4-212ENST00000591126 ITGAEP38570 1179 aa8.96□□□□□ -0.97
SMAD4-212ENST00000591126 NEFMP07197 916 aa8.95□□□□□ -0.98
SMAD4-212ENST00000591126 MTUS2Q5JR59 1369 aa8.95□□□□□ -0.98
SMAD4-212ENST00000591126 P3H3Q8IVL6 736 aa8.95□□□□□ -0.98
SMAD4-212ENST00000591126 GOLGA3Q08378 1498 aa8.95□□□□□ -0.98
SMAD4-212ENST00000591126 SMARCA4P51532 1647 aa8.94□□□□□ -0.98
SMAD4-212ENST00000591126 FANCD2Q9BXW9 1451 aa8.94□□□□□ -0.98
SMAD4-212ENST00000591126 SLC4A1APQ9BWU0 796 aaKnown RBP8.94□□□□□ -0.98
SMAD4-212ENST00000591126 HMGXB3Q12766 1538 aa8.93□□□□□ -0.98
SMAD4-212ENST00000591126 KCNH8Q96L42 1107 aa8.92□□□□□ -0.98
SMAD4-212ENST00000591126 FHAD1B1AJZ9 1412 aa8.92□□□□□ -0.98
SMAD4-212ENST00000591126 MRC2Q9UBG0 1479 aa8.92□□□□□ -0.98
SMAD4-212ENST00000591126 CUX2O14529 1486 aa8.91□□□□□ -0.98
SMAD4-212ENST00000591126 CARMIL1Q5VZK9 1371 aa8.91□□□□□ -0.98
SMAD4-212ENST00000591126 PPP1R15AO75807 674 aaPredicted RBP8.91□□□□□ -0.98
SMAD4-212ENST00000591126 PCGF6Q9BYE7 350 aa8.91□□□□□ -0.98
SMAD4-212ENST00000591126 KANK1Q14678 1352 aa8.9□□□□□ -0.98
SMAD4-212ENST00000591126 CC2D2AQ9P2K1 1620 aa8.89□□□□□ -0.99
SMAD4-212ENST00000591126 IFT140Q96RY7 1462 aa8.89□□□□□ -0.99
SMAD4-212ENST00000591126 RSPH4AQ5TD94 716 aa8.89□□□□□ -0.99
SMAD4-212ENST00000591126 EFCAB2Q5VUJ9 269 aa8.87□□□□□ -0.99
SMAD4-212ENST00000591126 TRIM26Q12899 539 aaPredicted RBP8.86□□□□□ -0.99
SMAD4-212ENST00000591126 CHGAP10645 457 aaKnown RBP8.85□□□□□ -0.99
SMAD4-212ENST00000591126 MROH2BQ7Z745 1585 aa8.85□□□□□ -0.99
SMAD4-212ENST00000591126 ARID3CA6NKF2 412 aa8.85□□□□□ -0.99
SMAD4-212ENST00000591126 CFDP1Q9UEE9 299 aaPredicted RBP8.85□□□□□ -0.99
SMAD4-212ENST00000591126 CCDC88BA6NC98 1476 aa8.84□□□□□ -0.99
SMAD4-212ENST00000591126 FOXD1Q16676 465 aa8.84□□□□□ -0.99
SMAD4-212ENST00000591126 C14orf37Q86TY3 774 aa8.84□□□□□ -0.99
SMAD4-212ENST00000591126 LAMC3Q9Y6N6 1575 aa8.84□□□□□ -0.99
SMAD4-212ENST00000591126 CEP162Q5TB80 1403 aa8.84□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms