RNA–Protein interactions for RNA: ENST00000571725.1

RPA1-204, Transcript of replication protein A1, humanhuman

TSL 5

Gene RPA1, Length 413 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPA1-204ENST00000571725 AEBP2Q6ZN18 517 aaPredicted RBP19.94■□□□□ 0.78
RPA1-204ENST00000571725 CHIC1Q5VXU3 224 aa18.8■□□□□ 0.6
RPA1-204ENST00000571725 SENP3Q9H4L4 574 aaPredicted RBP17.25■□□□□ 0.35
RPA1-204ENST00000571725 PHF23Q9BUL5 403 aaPredicted RBP16.9■□□□□ 0.3
RPA1-204ENST00000571725 FOXD1Q16676 465 aa16.08■□□□□ 0.16
RPA1-204ENST00000571725 POTEDQ86YR6 584 aa16.04■□□□□ 0.16
RPA1-204ENST00000571725 MSH5O43196 834 aa15.39■□□□□ 0.05
RPA1-204ENST00000571725 PIAS4Q8N2W9 510 aaPredicted RBP14.97□□□□□ -0.01
RPA1-204ENST00000571725 PPP6R1Q9UPN7 881 aa14.5□□□□□ -0.09
RPA1-204ENST00000571725 ADRA2BP18089 450 aa14.49□□□□□ -0.09
RPA1-204ENST00000571725 PLPPR3Q6T4P5 718 aa14.48□□□□□ -0.09
RPA1-204ENST00000571725 CACNB1Q02641 598 aaPredicted RBP13.65□□□□□ -0.22
RPA1-204ENST00000571725 DMRT2Q9Y5R5 561 aa13.52□□□□□ -0.25
RPA1-204ENST00000571725 MAPK8IP2Q13387 824 aaPredicted RBP13.48□□□□□ -0.25
RPA1-204ENST00000571725 SCAF1Q9H7N4 1312 aaKnown RBP13.39□□□□□ -0.27
RPA1-204ENST00000571725 DCAF8L1A6NGE4 600 aa13.2□□□□□ -0.3
RPA1-204ENST00000571725 RNF39Q9H2S5 420 aa12.99□□□□□ -0.33
RPA1-204ENST00000571725 C1QBPQ07021 282 aaKnown RBP12.82□□□□□ -0.36
RPA1-204ENST00000571725 HOXD11P31277 338 aaPredicted RBP12.74□□□□□ -0.37
RPA1-204ENST00000571725 PPP4R3CPQ6ZMV5 832 aa12.57□□□□□ -0.4
RPA1-204ENST00000571725 RNF216Q9NWF9 866 aaPredicted RBP12.52□□□□□ -0.41
RPA1-204ENST00000571725 CNKSR2Q8WXI2 1034 aa12.5□□□□□ -0.41
RPA1-204ENST00000571725 POTEHQ6S545 545 aa12.49□□□□□ -0.41
RPA1-204ENST00000571725 DNAJC5BQ9UF47 199 aa12.42□□□□□ -0.42
RPA1-204ENST00000571725 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.31□□□□□ -0.44
RPA1-204ENST00000571725 CAPN15O75808 1086 aa12.02□□□□□ -0.49
RPA1-204ENST00000571725 NCBP3Q53F19 620 aaKnown RBP12□□□□□ -0.49
RPA1-204ENST00000571725 DSG3P32926 999 aa11.96□□□□□ -0.49
RPA1-204ENST00000571725 SPINK5Q9NQ38 1064 aaPredicted RBP11.89□□□□□ -0.51
RPA1-204ENST00000571725 U3KPZ7 1027 aaPredicted RBP11.84□□□□□ -0.51
RPA1-204ENST00000571725 NPM3O75607 178 aaKnown RBP11.7□□□□□ -0.54
RPA1-204ENST00000571725 TRHP20396 242 aaPredicted RBP11.66□□□□□ -0.54
RPA1-204ENST00000571725 ABCB7O75027 752 aa11.64□□□□□ -0.55
RPA1-204ENST00000571725 APLP2Q06481 763 aa11.62□□□□□ -0.55
RPA1-204ENST00000571725 ZNF219Q9P2Y4 722 aaPredicted RBP11.6□□□□□ -0.55
RPA1-204ENST00000571725 RBM42Q9BTD8 480 aaKnown RBP11.54□□□□□ -0.56
RPA1-204ENST00000571725 CHRDL2Q6WN34 429 aa11.5□□□□□ -0.57
RPA1-204ENST00000571725 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.42□□□□□ -0.58
RPA1-204ENST00000571725 HNRNPUL2Q1KMD3 747 aaKnown RBP11.42□□□□□ -0.58
RPA1-204ENST00000571725 SP7Q8TDD2 431 aaPredicted RBP11.4□□□□□ -0.58
RPA1-204ENST00000571725 SAMD1Q6SPF0 538 aaPredicted RBP11.29□□□□□ -0.6
RPA1-204ENST00000571725 SLC4A2P04920 1241 aa11.28□□□□□ -0.6
RPA1-204ENST00000571725 POLA2Q14181 598 aa11.15□□□□□ -0.62
RPA1-204ENST00000571725 HAX1O00165 279 aa11.13□□□□□ -0.63
RPA1-204ENST00000571725 AKT1S1Q96B36 256 aa11.09□□□□□ -0.63
RPA1-204ENST00000571725 PIP4P2Q8N4L2 257 aa11.04□□□□□ -0.64
RPA1-204ENST00000571725 REM2Q8IYK8 340 aaPredicted RBP10.96□□□□□ -0.65
RPA1-204ENST00000571725 ZBTB12Q9Y330 459 aaPredicted RBP10.92□□□□□ -0.66
RPA1-204ENST00000571725 KCNA4P22459 653 aa10.91□□□□□ -0.66
RPA1-204ENST00000571725 MYCNP04198 464 aaPredicted RBP10.89□□□□□ -0.67
RPA1-204ENST00000571725 PITPNM1O00562 1244 aa10.85□□□□□ -0.67
RPA1-204ENST00000571725 FXR2P51116 673 aaKnown RBP eCLIP10.84□□□□□ -0.67
RPA1-204ENST00000571725 OSCARQ8IYS5 282 aa10.81□□□□□ -0.68
RPA1-204ENST00000571725 EVX2Q03828 476 aa10.77□□□□□ -0.69
RPA1-204ENST00000571725 LHX8Q68G74 356 aa10.71□□□□□ -0.69
RPA1-204ENST00000571725 PLSCR2Q9NRY7 297 aa10.68□□□□□ -0.7
RPA1-204ENST00000571725 PRKAR2AP13861 404 aaKnown RBP10.61□□□□□ -0.71
RPA1-204ENST00000571725 ATF5Q9Y2D1 282 aaPredicted RBP10.6□□□□□ -0.71
RPA1-204ENST00000571725 GABBR2O75899 941 aa10.57□□□□□ -0.72
RPA1-204ENST00000571725 CLEC11AQ9Y240 323 aa10.57□□□□□ -0.72
RPA1-204ENST00000571725 C19orf67A6NJJ6 358 aa10.53□□□□□ -0.72
RPA1-204ENST00000571725 SPDYE1Q8NFV5 336 aaPredicted RBP10.49□□□□□ -0.73
RPA1-204ENST00000571725 SPDYE2BA6NHP3 402 aa10.48□□□□□ -0.73
RPA1-204ENST00000571725 SPDYE6P0CI01 402 aa10.48□□□□□ -0.73
RPA1-204ENST00000571725 SPDYE2Q495Y8 402 aa10.48□□□□□ -0.73
RPA1-204ENST00000571725 FOXD4L1Q9NU39 408 aa10.43□□□□□ -0.74
RPA1-204ENST00000571725 FBLN2P98095 1184 aa10.41□□□□□ -0.74
RPA1-204ENST00000571725 CHADLQ6NUI6 762 aa10.35□□□□□ -0.75
RPA1-204ENST00000571725 ZNF692Q9BU19 519 aaPredicted RBP10.31□□□□□ -0.76
RPA1-204ENST00000571725 PRR29P0C7W0 189 aa10.27□□□□□ -0.77
RPA1-204ENST00000571725 DCBLD2Q96PD2 775 aa10.27□□□□□ -0.77
RPA1-204ENST00000571725 POTEIP0CG38 1075 aa10.25□□□□□ -0.77
RPA1-204ENST00000571725 CD44P16070 742 aaKnown RBP10.25□□□□□ -0.77
RPA1-204ENST00000571725 SLC4A1APQ9BWU0 796 aaKnown RBP10.25□□□□□ -0.77
RPA1-204ENST00000571725 CLCN6P51797 869 aa10.23□□□□□ -0.77
RPA1-204ENST00000571725 SSUH2Q9Y2M2 353 aa10.19□□□□□ -0.78
RPA1-204ENST00000571725 ATXN8OSP0DMR3 200 aa10.15□□□□□ -0.78
RPA1-204ENST00000571725 POTEMA6NI47 508 aa10.12□□□□□ -0.79
RPA1-204ENST00000571725 FARP1Q9Y4F1 1045 aaPredicted RBP10.11□□□□□ -0.79
RPA1-204ENST00000571725 PABPN1Q86U42 306 aaKnown RBP eCLIP10.1□□□□□ -0.79
RPA1-204ENST00000571725 POTEGQ6S5H5 508 aa10.08□□□□□ -0.8
RPA1-204ENST00000571725 MKRN4PQ13434 485 aaPredicted RBP10.06□□□□□ -0.8
RPA1-204ENST00000571725 OTUD5Q96G74 571 aa10.04□□□□□ -0.8
RPA1-204ENST00000571725 ZRANB1Q9UGI0 708 aa10.02□□□□□ -0.81
RPA1-204ENST00000571725 ZNF579Q8NAF0 562 aaKnown RBP10□□□□□ -0.81
RPA1-204ENST00000571725 PCDH10Q9P2E7 1040 aa10□□□□□ -0.81
RPA1-204ENST00000571725 ZBTB22O15209 634 aa9.94□□□□□ -0.82
RPA1-204ENST00000571725 GALR2O43603 387 aaPredicted RBP9.92□□□□□ -0.82
RPA1-204ENST00000571725 POTEB2H3BUK9 544 aa9.9□□□□□ -0.82
RPA1-204ENST00000571725 PAK3O75914 559 aaPredicted RBP9.89□□□□□ -0.83
RPA1-204ENST00000571725 MAMSTRQ6ZN01 415 aa9.81□□□□□ -0.84
RPA1-204ENST00000571725 FAM163AQ96GL9 167 aaPredicted RBP9.8□□□□□ -0.84
RPA1-204ENST00000571725 PHF12Q96QT6 1004 aa9.77□□□□□ -0.85
RPA1-204ENST00000571725 METRNQ9UJH8 293 aa9.77□□□□□ -0.85
RPA1-204ENST00000571725 PELP1Q8IZL8 1130 aaKnown RBP9.74□□□□□ -0.85
RPA1-204ENST00000571725 CREBZFQ9NS37 354 aa9.74□□□□□ -0.85
RPA1-204ENST00000571725 C7P10643 843 aa9.73□□□□□ -0.85
RPA1-204ENST00000571725 SLC39A7Q92504 469 aa9.73□□□□□ -0.85
RPA1-204ENST00000571725 SCUBE2Q9NQ36 999 aa9.73□□□□□ -0.85
RPA1-204ENST00000571725 STAG3Q9UJ98 1225 aa9.73□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 74.9 ms