Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
USP39Q53GS9 NSL1-201ENST00000366976 722 ntTSL 2 BASIC16.2■□□□□ 0.18
USP39Q53GS9 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC16.2■□□□□ 0.18
USP39Q53GS9 BOLA2P3-201ENST00000404566 256 ntBASIC16.2■□□□□ 0.18
USP39Q53GS9 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
USP39Q53GS9 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC16.2■□□□□ 0.18
USP39Q53GS9 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC16.2■□□□□ 0.18
USP39Q53GS9 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC16.2■□□□□ 0.18
USP39Q53GS9 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC16.2■□□□□ 0.18
USP39Q53GS9 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC16.2■□□□□ 0.18
USP39Q53GS9 CHMP2B-205ENST00000494980 1175 ntTSL 3 BASIC16.2■□□□□ 0.18
USP39Q53GS9 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
USP39Q53GS9 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC16.2■□□□□ 0.18
USP39Q53GS9 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
USP39Q53GS9 AC092337.1-201ENST00000568699 1129 ntBASIC16.2■□□□□ 0.18
USP39Q53GS9 AC015936.2-201ENST00000593177 259 ntBASIC16.2■□□□□ 0.18
USP39Q53GS9 AC074044.1-201ENST00000609673 707 ntBASIC16.2■□□□□ 0.18
USP39Q53GS9 COX11-210ENST00000639671 696 ntBASIC16.2■□□□□ 0.18
USP39Q53GS9 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
USP39Q53GS9 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC16.2■□□□□ 0.18
USP39Q53GS9 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
USP39Q53GS9 GCK-202ENST00000345378 2421 ntTSL 2 BASIC16.2■□□□□ 0.18
USP39Q53GS9 AL391005.1-201ENST00000623953 2435 ntBASIC16.2■□□□□ 0.18
USP39Q53GS9 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
USP39Q53GS9 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC16.2■□□□□ 0.18
USP39Q53GS9 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
USP39Q53GS9 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
USP39Q53GS9 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
USP39Q53GS9 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
USP39Q53GS9 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC16.2■□□□□ 0.18
USP39Q53GS9 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC16.2■□□□□ 0.18
USP39Q53GS9 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
USP39Q53GS9 BANP-204ENST00000393208 2283 ntTSL 2 BASIC16.2■□□□□ 0.18
USP39Q53GS9 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
USP39Q53GS9 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC16.2■□□□□ 0.18
USP39Q53GS9 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
USP39Q53GS9 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
USP39Q53GS9 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
USP39Q53GS9 DEK-201ENST00000244776 1441 ntTSL 2 BASIC16.19■□□□□ 0.18
USP39Q53GS9 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
USP39Q53GS9 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
USP39Q53GS9 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC16.19■□□□□ 0.18
USP39Q53GS9 AL512652.2-201ENST00000625156 1716 ntBASIC16.19■□□□□ 0.18
USP39Q53GS9 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC16.19■□□□□ 0.18
USP39Q53GS9 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC16.19■□□□□ 0.18
USP39Q53GS9 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
USP39Q53GS9 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
USP39Q53GS9 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC16.19■□□□□ 0.18
USP39Q53GS9 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC16.19■□□□□ 0.18
USP39Q53GS9 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
USP39Q53GS9 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC16.19■□□□□ 0.18
USP39Q53GS9 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
USP39Q53GS9 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
USP39Q53GS9 GPAA1P2-202ENST00000606848 1787 ntBASIC16.19■□□□□ 0.18
USP39Q53GS9 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC16.19■□□□□ 0.18
USP39Q53GS9 AC006538.1-201ENST00000567905 1585 ntBASIC16.19■□□□□ 0.18
USP39Q53GS9 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
USP39Q53GS9 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
USP39Q53GS9 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
USP39Q53GS9 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
USP39Q53GS9 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
USP39Q53GS9 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
USP39Q53GS9 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
USP39Q53GS9 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC16.19■□□□□ 0.18
USP39Q53GS9 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC16.19■□□□□ 0.18
USP39Q53GS9 KRT223P-202ENST00000449164 1292 ntBASIC16.19■□□□□ 0.18
USP39Q53GS9 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC16.19■□□□□ 0.18
USP39Q53GS9 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC16.19■□□□□ 0.18
USP39Q53GS9 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC16.19■□□□□ 0.18
USP39Q53GS9 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC16.19■□□□□ 0.18
USP39Q53GS9 WFDC1-204ENST00000613603 549 ntBASIC16.19■□□□□ 0.18
USP39Q53GS9 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
USP39Q53GS9 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
USP39Q53GS9 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC16.19■□□□□ 0.18
USP39Q53GS9 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
USP39Q53GS9 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
USP39Q53GS9 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
USP39Q53GS9 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
USP39Q53GS9 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
USP39Q53GS9 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
USP39Q53GS9 AC092364.2-201ENST00000596710 2692 ntBASIC16.19■□□□□ 0.18
USP39Q53GS9 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
USP39Q53GS9 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
USP39Q53GS9 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC16.19■□□□□ 0.18
USP39Q53GS9 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
USP39Q53GS9 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
USP39Q53GS9 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
USP39Q53GS9 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
USP39Q53GS9 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
USP39Q53GS9 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC16.18■□□□□ 0.18
USP39Q53GS9 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
USP39Q53GS9 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
USP39Q53GS9 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC16.18■□□□□ 0.18
USP39Q53GS9 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
USP39Q53GS9 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
USP39Q53GS9 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
USP39Q53GS9 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC16.18■□□□□ 0.18
USP39Q53GS9 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
USP39Q53GS9 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
USP39Q53GS9 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 52.4 ms