Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
TNFP01375 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TNFP01375 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
TNFP01375 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
TNFP01375 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
TNFP01375 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC15.51■□□□□ 0.07
TNFP01375 AL607033.1-201ENST00000623900 1599 ntBASIC15.51■□□□□ 0.07
TNFP01375 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TNFP01375 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC15.51■□□□□ 0.07
TNFP01375 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
TNFP01375 KRT18P64-201ENST00000434946 1219 ntBASIC15.51■□□□□ 0.07
TNFP01375 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC15.51■□□□□ 0.07
TNFP01375 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC15.51■□□□□ 0.07
TNFP01375 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC15.51■□□□□ 0.07
TNFP01375 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC15.51■□□□□ 0.07
TNFP01375 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC15.51■□□□□ 0.07
TNFP01375 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC15.51■□□□□ 0.07
TNFP01375 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
TNFP01375 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
TNFP01375 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC15.51■□□□□ 0.07
TNFP01375 AC097359.3-201ENST00000603982 1210 ntBASIC15.51■□□□□ 0.07
TNFP01375 AC133539.2-201ENST00000604757 467 ntBASIC15.51■□□□□ 0.07
TNFP01375 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
TNFP01375 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
TNFP01375 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
TNFP01375 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TNFP01375 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC15.51■□□□□ 0.07
TNFP01375 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TNFP01375 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
TNFP01375 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TNFP01375 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC15.51■□□□□ 0.07
TNFP01375 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC15.51■□□□□ 0.07
TNFP01375 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC15.51■□□□□ 0.07
TNFP01375 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TNFP01375 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TNFP01375 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
TNFP01375 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
TNFP01375 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC15.51■□□□□ 0.07
TNFP01375 AC011477.6-201ENST00000604980 1927 ntBASIC15.51■□□□□ 0.07
TNFP01375 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC15.51■□□□□ 0.07
TNFP01375 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TNFP01375 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC15.5■□□□□ 0.07
TNFP01375 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TNFP01375 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC15.5■□□□□ 0.07
TNFP01375 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
TNFP01375 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
TNFP01375 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TNFP01375 AC092364.2-201ENST00000596710 2692 ntBASIC15.5■□□□□ 0.07
TNFP01375 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC15.5■□□□□ 0.07
TNFP01375 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
TNFP01375 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC15.5■□□□□ 0.07
TNFP01375 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
TNFP01375 U91328.1-201ENST00000437528 223 ntBASIC15.5■□□□□ 0.07
TNFP01375 TTTY23B-201ENST00000442790 549 ntBASIC15.5■□□□□ 0.07
TNFP01375 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TNFP01375 GALT-202ENST00000450095 1280 ntTSL 2 BASIC15.5■□□□□ 0.07
TNFP01375 AC007389.4-201ENST00000454674 793 ntBASIC15.5■□□□□ 0.07
TNFP01375 GLI4-203ENST00000517468 963 ntTSL 5 BASIC15.5■□□□□ 0.07
TNFP01375 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC15.5■□□□□ 0.07
TNFP01375 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC15.5■□□□□ 0.07
TNFP01375 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC15.5■□□□□ 0.07
TNFP01375 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
TNFP01375 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC15.5■□□□□ 0.07
TNFP01375 AL359881.2-201ENST00000602973 570 ntBASIC15.5■□□□□ 0.07
TNFP01375 AL008721.1-201ENST00000609964 604 ntBASIC15.5■□□□□ 0.07
TNFP01375 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TNFP01375 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC15.5■□□□□ 0.07
TNFP01375 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TNFP01375 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
TNFP01375 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
TNFP01375 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
TNFP01375 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
TNFP01375 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC15.5■□□□□ 0.07
TNFP01375 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC15.5■□□□□ 0.07
TNFP01375 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TNFP01375 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
TNFP01375 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TNFP01375 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC15.5■□□□□ 0.07
TNFP01375 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
TNFP01375 LTB4R2-202ENST00000528054 3092 ntBASIC15.49■□□□□ 0.07
TNFP01375 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
TNFP01375 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC15.49■□□□□ 0.07
TNFP01375 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC15.49■□□□□ 0.07
TNFP01375 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.07
TNFP01375 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
TNFP01375 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
TNFP01375 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC15.49■□□□□ 0.07
TNFP01375 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC15.49■□□□□ 0.07
TNFP01375 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC15.49■□□□□ 0.07
TNFP01375 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC15.49■□□□□ 0.07
TNFP01375 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
TNFP01375 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
TNFP01375 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
TNFP01375 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
TNFP01375 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
TNFP01375 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
TNFP01375 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
TNFP01375 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
TNFP01375 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
TNFP01375 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms