Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SMC4Q9NTJ3 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
SMC4Q9NTJ3 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
SMC4Q9NTJ3 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SMC4Q9NTJ3 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
SMC4Q9NTJ3 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
SMC4Q9NTJ3 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
SMC4Q9NTJ3 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
SMC4Q9NTJ3 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SMC4Q9NTJ3 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC20.47■□□□□ 0.87
SMC4Q9NTJ3 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SMC4Q9NTJ3 KRT8P12-202ENST00000472924 1397 ntBASIC20.46■□□□□ 0.87
SMC4Q9NTJ3 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
SMC4Q9NTJ3 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC20.46■□□□□ 0.87
SMC4Q9NTJ3 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC20.46■□□□□ 0.87
SMC4Q9NTJ3 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SMC4Q9NTJ3 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
SMC4Q9NTJ3 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC20.46■□□□□ 0.87
SMC4Q9NTJ3 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC20.46■□□□□ 0.87
SMC4Q9NTJ3 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
SMC4Q9NTJ3 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SMC4Q9NTJ3 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
SMC4Q9NTJ3 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
SMC4Q9NTJ3 BAD-202ENST00000394531 631 ntTSL 3 BASIC20.46■□□□□ 0.87
SMC4Q9NTJ3 RPL37AP1-201ENST00000412502 279 ntBASIC20.46■□□□□ 0.87
SMC4Q9NTJ3 AC107890.1-201ENST00000422478 521 ntBASIC20.46■□□□□ 0.87
SMC4Q9NTJ3 PON3-203ENST00000427422 894 ntTSL 3 BASIC20.46■□□□□ 0.87
SMC4Q9NTJ3 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC20.46■□□□□ 0.87
SMC4Q9NTJ3 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SMC4Q9NTJ3 PHKG1P2-201ENST00000457537 863 ntBASIC20.46■□□□□ 0.87
SMC4Q9NTJ3 BAD-207ENST00000544785 525 ntTSL 3 BASIC20.46■□□□□ 0.87
SMC4Q9NTJ3 MIR4313-201ENST00000580760 101 ntBASIC20.46■□□□□ 0.87
SMC4Q9NTJ3 GPER1-207ENST00000619052 571 ntTSL 2 BASIC20.46■□□□□ 0.87
SMC4Q9NTJ3 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
SMC4Q9NTJ3 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC20.46■□□□□ 0.87
SMC4Q9NTJ3 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC20.46■□□□□ 0.87
SMC4Q9NTJ3 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
SMC4Q9NTJ3 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
SMC4Q9NTJ3 AC092850.2-201ENST00000623821 2697 ntBASIC20.46■□□□□ 0.87
SMC4Q9NTJ3 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC20.46■□□□□ 0.87
SMC4Q9NTJ3 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SMC4Q9NTJ3 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC20.46■□□□□ 0.87
SMC4Q9NTJ3 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SMC4Q9NTJ3 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC20.46■□□□□ 0.87
SMC4Q9NTJ3 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC20.46■□□□□ 0.87
SMC4Q9NTJ3 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
SMC4Q9NTJ3 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC20.45■□□□□ 0.86
SMC4Q9NTJ3 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SMC4Q9NTJ3 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
SMC4Q9NTJ3 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SMC4Q9NTJ3 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC20.45■□□□□ 0.86
SMC4Q9NTJ3 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
SMC4Q9NTJ3 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC20.45■□□□□ 0.86
SMC4Q9NTJ3 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SMC4Q9NTJ3 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC20.45■□□□□ 0.86
SMC4Q9NTJ3 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
SMC4Q9NTJ3 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SMC4Q9NTJ3 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
SMC4Q9NTJ3 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC20.45■□□□□ 0.86
SMC4Q9NTJ3 AC092183.1-201ENST00000469884 875 ntBASIC20.45■□□□□ 0.86
SMC4Q9NTJ3 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC20.45■□□□□ 0.86
SMC4Q9NTJ3 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SMC4Q9NTJ3 HNRNPUP1-201ENST00000554987 333 ntBASIC20.45■□□□□ 0.86
SMC4Q9NTJ3 PRR29-209ENST00000582540 967 ntTSL 2 BASIC20.45■□□□□ 0.86
SMC4Q9NTJ3 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC20.45■□□□□ 0.86
SMC4Q9NTJ3 AL138828.2-201ENST00000615812 383 ntBASIC20.45■□□□□ 0.86
SMC4Q9NTJ3 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SMC4Q9NTJ3 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC20.45■□□□□ 0.86
SMC4Q9NTJ3 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SMC4Q9NTJ3 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SMC4Q9NTJ3 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
SMC4Q9NTJ3 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
SMC4Q9NTJ3 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SMC4Q9NTJ3 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC20.45■□□□□ 0.86
SMC4Q9NTJ3 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC20.45■□□□□ 0.86
SMC4Q9NTJ3 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC20.45■□□□□ 0.86
SMC4Q9NTJ3 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC20.45■□□□□ 0.86
SMC4Q9NTJ3 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
SMC4Q9NTJ3 GRAMD4P3-201ENST00000621665 1669 ntBASIC20.45■□□□□ 0.86
SMC4Q9NTJ3 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
SMC4Q9NTJ3 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC20.44■□□□□ 0.86
SMC4Q9NTJ3 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
SMC4Q9NTJ3 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
SMC4Q9NTJ3 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
SMC4Q9NTJ3 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
SMC4Q9NTJ3 ING5-213ENST00000636051 4199 ntTSL 5 BASIC20.44■□□□□ 0.86
SMC4Q9NTJ3 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC20.44■□□□□ 0.86
SMC4Q9NTJ3 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
SMC4Q9NTJ3 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SMC4Q9NTJ3 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SMC4Q9NTJ3 AC067863.1-201ENST00000494933 530 ntBASIC20.44■□□□□ 0.86
SMC4Q9NTJ3 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC20.44■□□□□ 0.86
SMC4Q9NTJ3 SUOX-214ENST00000551841 906 ntTSL 3 BASIC20.44■□□□□ 0.86
SMC4Q9NTJ3 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC20.44■□□□□ 0.86
SMC4Q9NTJ3 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
SMC4Q9NTJ3 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
SMC4Q9NTJ3 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC20.44■□□□□ 0.86
SMC4Q9NTJ3 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SMC4Q9NTJ3 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC20.44■□□□□ 0.86
SMC4Q9NTJ3 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms