Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 RPGRIP1-210ENST00000556336 2955 ntTSL 5 BASIC15.39■□□□□ 0.05
VMP1Q96GC9 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC15.38■□□□□ 0.05
VMP1Q96GC9 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC15.38■□□□□ 0.05
VMP1Q96GC9 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
VMP1Q96GC9 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC15.38■□□□□ 0.05
VMP1Q96GC9 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC15.38■□□□□ 0.05
VMP1Q96GC9 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC15.38■□□□□ 0.05
VMP1Q96GC9 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
VMP1Q96GC9 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC15.38■□□□□ 0.05
VMP1Q96GC9 SNX30-201ENST00000374232 7622 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
VMP1Q96GC9 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC15.38■□□□□ 0.05
VMP1Q96GC9 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
VMP1Q96GC9 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC15.38■□□□□ 0.05
VMP1Q96GC9 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC15.38■□□□□ 0.05
VMP1Q96GC9 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
VMP1Q96GC9 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
VMP1Q96GC9 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
VMP1Q96GC9 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC15.38■□□□□ 0.05
VMP1Q96GC9 LBH-203ENST00000404397 543 ntTSL 4 BASIC15.38■□□□□ 0.05
VMP1Q96GC9 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC15.38■□□□□ 0.05
VMP1Q96GC9 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC15.38■□□□□ 0.05
VMP1Q96GC9 TSEN15P1-201ENST00000423257 515 ntBASIC15.38■□□□□ 0.05
VMP1Q96GC9 KRT18P32-201ENST00000424695 1287 ntBASIC15.38■□□□□ 0.05
VMP1Q96GC9 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC15.38■□□□□ 0.05
VMP1Q96GC9 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC15.38■□□□□ 0.05
VMP1Q96GC9 AC069335.1-201ENST00000489972 472 ntBASIC15.38■□□□□ 0.05
VMP1Q96GC9 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC15.38■□□□□ 0.05
VMP1Q96GC9 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC15.38■□□□□ 0.05
VMP1Q96GC9 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC15.38■□□□□ 0.05
VMP1Q96GC9 LHFPL2-207ENST00000515007 4680 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
VMP1Q96GC9 BCL11B-201ENST00000345514 7603 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
VMP1Q96GC9 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
VMP1Q96GC9 SEMA4F-210ENST00000611975 6007 ntTSL 5 BASIC15.38■□□□□ 0.05
VMP1Q96GC9 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
VMP1Q96GC9 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
VMP1Q96GC9 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
VMP1Q96GC9 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
VMP1Q96GC9 KRT18P28-201ENST00000453838 1332 ntBASIC15.38■□□□□ 0.05
VMP1Q96GC9 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
VMP1Q96GC9 SGK1-205ENST00000413996 2686 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
VMP1Q96GC9 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC15.38■□□□□ 0.05
VMP1Q96GC9 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
VMP1Q96GC9 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
VMP1Q96GC9 NARF-206ENST00000457415 1668 ntTSL 5 BASIC15.38■□□□□ 0.05
VMP1Q96GC9 ATP2B3-204ENST00000370186 6742 ntTSL 5 BASIC15.38■□□□□ 0.05
VMP1Q96GC9 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC15.38■□□□□ 0.05
VMP1Q96GC9 UXT-AS1-201ENST00000590504 1525 ntBASIC15.38■□□□□ 0.05
VMP1Q96GC9 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC15.38■□□□□ 0.05
VMP1Q96GC9 STK17B-201ENST00000263955 5287 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
VMP1Q96GC9 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
VMP1Q96GC9 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
VMP1Q96GC9 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC15.37■□□□□ 0.05
VMP1Q96GC9 HIPK3-201ENST00000303296 7408 ntTSL 5 BASIC15.37■□□□□ 0.05
VMP1Q96GC9 ABCA7-203ENST00000435683 6211 ntAPPRIS ALT2 TSL 5 BASIC15.37■□□□□ 0.05
VMP1Q96GC9 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC15.37■□□□□ 0.05
VMP1Q96GC9 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC15.37■□□□□ 0.05
VMP1Q96GC9 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC15.37■□□□□ 0.05
VMP1Q96GC9 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC15.37■□□□□ 0.05
VMP1Q96GC9 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
VMP1Q96GC9 MYH6-201ENST00000356287 5871 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
VMP1Q96GC9 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
VMP1Q96GC9 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC15.37■□□□□ 0.05
VMP1Q96GC9 PITPNM3-201ENST00000262483 7086 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
VMP1Q96GC9 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC15.37■□□□□ 0.05
VMP1Q96GC9 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
VMP1Q96GC9 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
VMP1Q96GC9 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC15.37■□□□□ 0.05
VMP1Q96GC9 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC15.37■□□□□ 0.05
VMP1Q96GC9 METTL21AP1-201ENST00000438852 635 ntBASIC15.37■□□□□ 0.05
VMP1Q96GC9 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC15.37■□□□□ 0.05
VMP1Q96GC9 AC105233.2-201ENST00000523697 349 ntBASIC15.37■□□□□ 0.05
VMP1Q96GC9 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC15.37■□□□□ 0.05
VMP1Q96GC9 AF228730.5-201ENST00000530288 346 ntBASIC15.37■□□□□ 0.05
VMP1Q96GC9 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC15.37■□□□□ 0.05
VMP1Q96GC9 QPRT-203ENST00000562473 579 ntTSL 3 BASIC15.37■□□□□ 0.05
VMP1Q96GC9 LINC01225-203ENST00000563550 1244 ntBASIC15.37■□□□□ 0.05
VMP1Q96GC9 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
VMP1Q96GC9 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC15.37■□□□□ 0.05
VMP1Q96GC9 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC15.37■□□□□ 0.05
VMP1Q96GC9 AC009093.7-201ENST00000623853 1223 ntBASIC15.37■□□□□ 0.05
VMP1Q96GC9 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC15.37■□□□□ 0.05
VMP1Q96GC9 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
VMP1Q96GC9 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
VMP1Q96GC9 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC15.37■□□□□ 0.05
VMP1Q96GC9 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC15.37■□□□□ 0.05
VMP1Q96GC9 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
VMP1Q96GC9 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
VMP1Q96GC9 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
VMP1Q96GC9 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC15.37■□□□□ 0.05
VMP1Q96GC9 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC15.37■□□□□ 0.05
VMP1Q96GC9 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
VMP1Q96GC9 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC15.37■□□□□ 0.05
VMP1Q96GC9 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
VMP1Q96GC9 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC15.37■□□□□ 0.05
VMP1Q96GC9 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC15.37■□□□□ 0.05
VMP1Q96GC9 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
VMP1Q96GC9 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC15.36■□□□□ 0.05
VMP1Q96GC9 GPAA1P2-202ENST00000606848 1787 ntBASIC15.36■□□□□ 0.05
VMP1Q96GC9 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
VMP1Q96GC9 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms