Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC15.48■□□□□ 0.07
FOXA1P55317 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC15.48■□□□□ 0.07
FOXA1P55317 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC15.48■□□□□ 0.07
FOXA1P55317 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC15.48■□□□□ 0.07
FOXA1P55317 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
FOXA1P55317 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC15.48■□□□□ 0.07
FOXA1P55317 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
FOXA1P55317 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC15.48■□□□□ 0.07
FOXA1P55317 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
FOXA1P55317 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC15.48■□□□□ 0.07
FOXA1P55317 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
FOXA1P55317 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC15.48■□□□□ 0.07
FOXA1P55317 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC15.48■□□□□ 0.07
FOXA1P55317 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC15.48■□□□□ 0.07
FOXA1P55317 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
FOXA1P55317 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC15.48■□□□□ 0.07
FOXA1P55317 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC15.48■□□□□ 0.07
FOXA1P55317 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC15.48■□□□□ 0.07
FOXA1P55317 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC15.48■□□□□ 0.07
FOXA1P55317 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
FOXA1P55317 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC15.47■□□□□ 0.07
FOXA1P55317 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
FOXA1P55317 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
FOXA1P55317 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
FOXA1P55317 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
FOXA1P55317 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
FOXA1P55317 RER1-203ENST00000378513 3000 ntTSL 3 BASIC15.47■□□□□ 0.07
FOXA1P55317 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
FOXA1P55317 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
FOXA1P55317 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC15.47■□□□□ 0.07
FOXA1P55317 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC15.47■□□□□ 0.07
FOXA1P55317 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
FOXA1P55317 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
FOXA1P55317 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
FOXA1P55317 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
FOXA1P55317 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
FOXA1P55317 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC15.47■□□□□ 0.07
FOXA1P55317 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
FOXA1P55317 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
FOXA1P55317 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC15.47■□□□□ 0.07
FOXA1P55317 AL591424.1-201ENST00000442569 1213 ntBASIC15.47■□□□□ 0.07
FOXA1P55317 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC15.47■□□□□ 0.07
FOXA1P55317 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC15.47■□□□□ 0.07
FOXA1P55317 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC15.47■□□□□ 0.07
FOXA1P55317 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC15.47■□□□□ 0.07
FOXA1P55317 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC15.47■□□□□ 0.07
FOXA1P55317 AC243562.1-201ENST00000560672 389 ntBASIC15.47■□□□□ 0.07
FOXA1P55317 COX5A-206ENST00000568783 571 ntTSL 3 BASIC15.47■□□□□ 0.07
FOXA1P55317 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC15.47■□□□□ 0.07
FOXA1P55317 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC15.47■□□□□ 0.07
FOXA1P55317 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC15.47■□□□□ 0.07
FOXA1P55317 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC15.47■□□□□ 0.07
FOXA1P55317 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC15.47■□□□□ 0.07
FOXA1P55317 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC15.47■□□□□ 0.07
FOXA1P55317 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
FOXA1P55317 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC15.47■□□□□ 0.07
FOXA1P55317 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
FOXA1P55317 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
FOXA1P55317 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
FOXA1P55317 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC15.47■□□□□ 0.07
FOXA1P55317 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
FOXA1P55317 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC15.47■□□□□ 0.07
FOXA1P55317 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC15.46■□□□□ 0.07
FOXA1P55317 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC15.46■□□□□ 0.07
FOXA1P55317 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
FOXA1P55317 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
FOXA1P55317 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.07
FOXA1P55317 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC15.46■□□□□ 0.07
FOXA1P55317 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.07
FOXA1P55317 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
FOXA1P55317 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
FOXA1P55317 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC15.46■□□□□ 0.07
FOXA1P55317 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
FOXA1P55317 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
FOXA1P55317 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC15.46■□□□□ 0.07
FOXA1P55317 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.07
FOXA1P55317 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
FOXA1P55317 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
FOXA1P55317 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC15.46■□□□□ 0.07
FOXA1P55317 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
FOXA1P55317 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC15.46■□□□□ 0.07
FOXA1P55317 FAM58CP-201ENST00000435741 640 ntBASIC15.46■□□□□ 0.07
FOXA1P55317 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
FOXA1P55317 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
FOXA1P55317 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
FOXA1P55317 RNA5SP410-201ENST00000516285 106 ntBASIC15.46■□□□□ 0.07
FOXA1P55317 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC15.46■□□□□ 0.07
FOXA1P55317 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC15.46■□□□□ 0.07
FOXA1P55317 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC15.46■□□□□ 0.07
FOXA1P55317 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
FOXA1P55317 FAM197Y3-203ENST00000618346 717 ntBASIC15.46■□□□□ 0.07
FOXA1P55317 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
FOXA1P55317 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
FOXA1P55317 TCAF2P1-201ENST00000291129 2421 ntBASIC15.46■□□□□ 0.07
FOXA1P55317 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.07
FOXA1P55317 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC15.46■□□□□ 0.07
FOXA1P55317 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC15.46■□□□□ 0.06
FOXA1P55317 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
FOXA1P55317 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC15.46■□□□□ 0.06
FOXA1P55317 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC15.46■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms