Protein–RNA interactions for Protein: P51790

CLCN3, H(+)/Cl(-) exchange transporter 3, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3P51790 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC17.46■□□□□ 0.39
CLCN3P51790 WAC-202ENST00000347934 2839 ntTSL 5 BASIC17.46■□□□□ 0.39
CLCN3P51790 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CLCN3P51790 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC17.46■□□□□ 0.39
CLCN3P51790 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
CLCN3P51790 AC084018.2-201ENST00000613093 2607 ntBASIC17.46■□□□□ 0.39
CLCN3P51790 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
CLCN3P51790 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC17.46■□□□□ 0.39
CLCN3P51790 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC17.46■□□□□ 0.38
CLCN3P51790 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC17.45■□□□□ 0.38
CLCN3P51790 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CLCN3P51790 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CLCN3P51790 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CLCN3P51790 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CLCN3P51790 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CLCN3P51790 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CLCN3P51790 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CLCN3P51790 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC17.45■□□□□ 0.38
CLCN3P51790 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CLCN3P51790 LINC02199-201ENST00000506655 2702 ntBASIC17.45■□□□□ 0.38
CLCN3P51790 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CLCN3P51790 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
CLCN3P51790 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
CLCN3P51790 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CLCN3P51790 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CLCN3P51790 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC17.45■□□□□ 0.38
CLCN3P51790 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CLCN3P51790 MXI1-205ENST00000393134 889 ntTSL 2 BASIC17.45■□□□□ 0.38
CLCN3P51790 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CLCN3P51790 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC17.45■□□□□ 0.38
CLCN3P51790 TOMM22P5-201ENST00000416399 439 ntBASIC17.45■□□□□ 0.38
CLCN3P51790 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CLCN3P51790 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC17.45■□□□□ 0.38
CLCN3P51790 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC17.45■□□□□ 0.38
CLCN3P51790 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC17.45■□□□□ 0.38
CLCN3P51790 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC17.45■□□□□ 0.38
CLCN3P51790 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC17.45■□□□□ 0.38
CLCN3P51790 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC17.45■□□□□ 0.38
CLCN3P51790 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC17.45■□□□□ 0.38
CLCN3P51790 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC17.45■□□□□ 0.38
CLCN3P51790 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CLCN3P51790 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CLCN3P51790 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC17.45■□□□□ 0.38
CLCN3P51790 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CLCN3P51790 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CLCN3P51790 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
CLCN3P51790 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC17.45■□□□□ 0.38
CLCN3P51790 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CLCN3P51790 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
CLCN3P51790 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CLCN3P51790 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC17.45■□□□□ 0.38
CLCN3P51790 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CLCN3P51790 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CLCN3P51790 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC17.45■□□□□ 0.38
CLCN3P51790 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC17.45■□□□□ 0.38
CLCN3P51790 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC17.45■□□□□ 0.38
CLCN3P51790 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CLCN3P51790 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CLCN3P51790 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC17.44■□□□□ 0.38
CLCN3P51790 CROCCP1-201ENST00000426910 5675 ntBASIC17.44■□□□□ 0.38
CLCN3P51790 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CLCN3P51790 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC17.44■□□□□ 0.38
CLCN3P51790 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CLCN3P51790 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CLCN3P51790 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CLCN3P51790 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
CLCN3P51790 TTTY23B-201ENST00000442790 549 ntBASIC17.44■□□□□ 0.38
CLCN3P51790 FAM86LP-201ENST00000478302 853 ntBASIC17.44■□□□□ 0.38
CLCN3P51790 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC17.44■□□□□ 0.38
CLCN3P51790 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC17.44■□□□□ 0.38
CLCN3P51790 EHF-205ENST00000527935 557 ntTSL 2 BASIC17.44■□□□□ 0.38
CLCN3P51790 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC17.44■□□□□ 0.38
CLCN3P51790 HILS1-202ENST00000545329 423 ntBASIC17.44■□□□□ 0.38
CLCN3P51790 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC17.44■□□□□ 0.38
CLCN3P51790 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
CLCN3P51790 AL033527.5-201ENST00000641382 801 ntBASIC17.44■□□□□ 0.38
CLCN3P51790 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
CLCN3P51790 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
CLCN3P51790 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CLCN3P51790 AC011477.6-201ENST00000604980 1927 ntBASIC17.44■□□□□ 0.38
CLCN3P51790 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CLCN3P51790 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC17.44■□□□□ 0.38
CLCN3P51790 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CLCN3P51790 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CLCN3P51790 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
CLCN3P51790 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CLCN3P51790 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CLCN3P51790 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC17.44■□□□□ 0.38
CLCN3P51790 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CLCN3P51790 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
CLCN3P51790 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CLCN3P51790 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
CLCN3P51790 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC17.43■□□□□ 0.38
CLCN3P51790 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
CLCN3P51790 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CLCN3P51790 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC17.43■□□□□ 0.38
CLCN3P51790 RERG-209ENST00000546331 1383 ntTSL 2 BASIC17.43■□□□□ 0.38
CLCN3P51790 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CLCN3P51790 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CLCN3P51790 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC17.43■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 72.9 ms