Protein–RNA interactions for Protein: Q9UJV9

DDX41, Probable ATP-dependent RNA helicase DDX41, humanhuman

Known RBP Predictions only

Length 622 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41Q9UJV9 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC26.92■■□□□ 1.9
DDX41Q9UJV9 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC26.92■■□□□ 1.9
DDX41Q9UJV9 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
DDX41Q9UJV9 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
DDX41Q9UJV9 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC26.91■■□□□ 1.9
DDX41Q9UJV9 AC131212.1-201ENST00000613771 668 ntBASIC26.91■■□□□ 1.9
DDX41Q9UJV9 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC26.91■■□□□ 1.9
DDX41Q9UJV9 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC26.9■■□□□ 1.9
DDX41Q9UJV9 RARA-203ENST00000394086 2008 ntTSL 2 BASIC26.9■■□□□ 1.9
DDX41Q9UJV9 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC26.9■■□□□ 1.9
DDX41Q9UJV9 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC26.9■■□□□ 1.9
DDX41Q9UJV9 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC26.9■■□□□ 1.9
DDX41Q9UJV9 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC26.9■■□□□ 1.9
DDX41Q9UJV9 CREM-229ENST00000474362 1030 ntTSL 2 BASIC26.9■■□□□ 1.9
DDX41Q9UJV9 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC26.9■■□□□ 1.9
DDX41Q9UJV9 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC26.9■■□□□ 1.9
DDX41Q9UJV9 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC26.9■■□□□ 1.9
DDX41Q9UJV9 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC26.9■■□□□ 1.9
DDX41Q9UJV9 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC26.89■■□□□ 1.9
DDX41Q9UJV9 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.9
DDX41Q9UJV9 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC26.89■■□□□ 1.9
DDX41Q9UJV9 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.9
DDX41Q9UJV9 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC26.89■■□□□ 1.9
DDX41Q9UJV9 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC26.89■■□□□ 1.9
DDX41Q9UJV9 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC26.89■■□□□ 1.9
DDX41Q9UJV9 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.9
DDX41Q9UJV9 AL592295.1-201ENST00000400984 884 ntBASIC26.89■■□□□ 1.9
DDX41Q9UJV9 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.9
DDX41Q9UJV9 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC26.89■■□□□ 1.9
DDX41Q9UJV9 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC26.89■■□□□ 1.89
DDX41Q9UJV9 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC26.89■■□□□ 1.89
DDX41Q9UJV9 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.89
DDX41Q9UJV9 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC26.89■■□□□ 1.89
DDX41Q9UJV9 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
DDX41Q9UJV9 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
DDX41Q9UJV9 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC26.88■■□□□ 1.89
DDX41Q9UJV9 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC26.88■■□□□ 1.89
DDX41Q9UJV9 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC26.87■■□□□ 1.89
DDX41Q9UJV9 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
DDX41Q9UJV9 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC26.87■■□□□ 1.89
DDX41Q9UJV9 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
DDX41Q9UJV9 BX664725.1-201ENST00000438252 379 ntBASIC26.87■■□□□ 1.89
DDX41Q9UJV9 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC26.87■■□□□ 1.89
DDX41Q9UJV9 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC26.86■■□□□ 1.89
DDX41Q9UJV9 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC26.86■■□□□ 1.89
DDX41Q9UJV9 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC26.86■■□□□ 1.89
DDX41Q9UJV9 AC137630.3-201ENST00000607245 391 ntBASIC26.86■■□□□ 1.89
DDX41Q9UJV9 MIR4787-201ENST00000607364 84 ntBASIC26.86■■□□□ 1.89
DDX41Q9UJV9 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
DDX41Q9UJV9 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC26.85■■□□□ 1.89
DDX41Q9UJV9 KRT125P-201ENST00000546827 989 ntBASIC26.85■■□□□ 1.89
DDX41Q9UJV9 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC26.85■■□□□ 1.89
DDX41Q9UJV9 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC26.85■■□□□ 1.89
DDX41Q9UJV9 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC26.84■■□□□ 1.89
DDX41Q9UJV9 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC26.84■■□□□ 1.89
DDX41Q9UJV9 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
DDX41Q9UJV9 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC26.84■■□□□ 1.89
DDX41Q9UJV9 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC26.84■■□□□ 1.89
DDX41Q9UJV9 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC26.84■■□□□ 1.89
DDX41Q9UJV9 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC26.84■■□□□ 1.89
DDX41Q9UJV9 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC26.83■■□□□ 1.89
DDX41Q9UJV9 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC26.83■■□□□ 1.89
DDX41Q9UJV9 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC26.83■■□□□ 1.89
DDX41Q9UJV9 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC26.83■■□□□ 1.89
DDX41Q9UJV9 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
DDX41Q9UJV9 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
DDX41Q9UJV9 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC26.83■■□□□ 1.89
DDX41Q9UJV9 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC26.82■■□□□ 1.88
DDX41Q9UJV9 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
DDX41Q9UJV9 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC26.82■■□□□ 1.88
DDX41Q9UJV9 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC26.82■■□□□ 1.88
DDX41Q9UJV9 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC26.82■■□□□ 1.88
DDX41Q9UJV9 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC26.81■■□□□ 1.88
DDX41Q9UJV9 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
DDX41Q9UJV9 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC26.81■■□□□ 1.88
DDX41Q9UJV9 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC26.81■■□□□ 1.88
DDX41Q9UJV9 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC26.81■■□□□ 1.88
DDX41Q9UJV9 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC26.81■■□□□ 1.88
DDX41Q9UJV9 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC26.81■■□□□ 1.88
DDX41Q9UJV9 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC26.8■■□□□ 1.88
DDX41Q9UJV9 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
DDX41Q9UJV9 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC26.8■■□□□ 1.88
DDX41Q9UJV9 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
DDX41Q9UJV9 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC26.8■■□□□ 1.88
DDX41Q9UJV9 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC26.8■■□□□ 1.88
DDX41Q9UJV9 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC26.8■■□□□ 1.88
DDX41Q9UJV9 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
DDX41Q9UJV9 THRA-202ENST00000394121 2260 ntTSL 2 BASIC26.79■■□□□ 1.88
DDX41Q9UJV9 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC26.79■■□□□ 1.88
DDX41Q9UJV9 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC26.79■■□□□ 1.88
DDX41Q9UJV9 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC26.79■■□□□ 1.88
DDX41Q9UJV9 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC26.79■■□□□ 1.88
DDX41Q9UJV9 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
DDX41Q9UJV9 AC021242.3-201ENST00000607598 1377 ntBASIC26.79■■□□□ 1.88
DDX41Q9UJV9 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC26.79■■□□□ 1.88
DDX41Q9UJV9 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC26.79■■□□□ 1.88
DDX41Q9UJV9 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC26.78■■□□□ 1.88
DDX41Q9UJV9 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC26.78■■□□□ 1.88
DDX41Q9UJV9 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
DDX41Q9UJV9 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC26.78■■□□□ 1.88
Retrieved 100 of 98,524 protein–RNA pairs in 15.4 ms