Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
DDX28Q9NUL7 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
DDX28Q9NUL7 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
DDX28Q9NUL7 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
DDX28Q9NUL7 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
DDX28Q9NUL7 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC21.21■□□□□ 0.99
DDX28Q9NUL7 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
DDX28Q9NUL7 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC21.21■□□□□ 0.99
DDX28Q9NUL7 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
DDX28Q9NUL7 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
DDX28Q9NUL7 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
DDX28Q9NUL7 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
DDX28Q9NUL7 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
DDX28Q9NUL7 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
DDX28Q9NUL7 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC21.2■□□□□ 0.98
DDX28Q9NUL7 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
DDX28Q9NUL7 AL157400.5-201ENST00000507624 621 ntBASIC21.2■□□□□ 0.98
DDX28Q9NUL7 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
DDX28Q9NUL7 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
DDX28Q9NUL7 PREB-202ENST00000406567 1910 ntTSL 5 BASIC21.19■□□□□ 0.98
DDX28Q9NUL7 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC21.19■□□□□ 0.98
DDX28Q9NUL7 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
DDX28Q9NUL7 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
DDX28Q9NUL7 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
DDX28Q9NUL7 AC060814.1-201ENST00000554326 538 ntBASIC21.19■□□□□ 0.98
DDX28Q9NUL7 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC21.19■□□□□ 0.98
DDX28Q9NUL7 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC21.19■□□□□ 0.98
DDX28Q9NUL7 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
DDX28Q9NUL7 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC21.19■□□□□ 0.98
DDX28Q9NUL7 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
DDX28Q9NUL7 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC21.18■□□□□ 0.98
DDX28Q9NUL7 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
DDX28Q9NUL7 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
DDX28Q9NUL7 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
DDX28Q9NUL7 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
DDX28Q9NUL7 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
DDX28Q9NUL7 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
DDX28Q9NUL7 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
DDX28Q9NUL7 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC21.17■□□□□ 0.98
DDX28Q9NUL7 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
DDX28Q9NUL7 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
DDX28Q9NUL7 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
DDX28Q9NUL7 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
DDX28Q9NUL7 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
DDX28Q9NUL7 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
DDX28Q9NUL7 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
DDX28Q9NUL7 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
DDX28Q9NUL7 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
DDX28Q9NUL7 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC21.15■□□□□ 0.98
DDX28Q9NUL7 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
DDX28Q9NUL7 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
DDX28Q9NUL7 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
DDX28Q9NUL7 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
DDX28Q9NUL7 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC21.14■□□□□ 0.98
DDX28Q9NUL7 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC21.14■□□□□ 0.98
DDX28Q9NUL7 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
DDX28Q9NUL7 TPT1-202ENST00000379055 948 ntTSL 2 BASIC21.14■□□□□ 0.97
DDX28Q9NUL7 AC025884.2-201ENST00000553429 711 ntBASIC21.14■□□□□ 0.97
DDX28Q9NUL7 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
DDX28Q9NUL7 SRP68-213ENST00000629930 165 ntTSL 5 BASIC21.14■□□□□ 0.97
DDX28Q9NUL7 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
DDX28Q9NUL7 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
DDX28Q9NUL7 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
DDX28Q9NUL7 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC21.13■□□□□ 0.97
DDX28Q9NUL7 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
DDX28Q9NUL7 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
DDX28Q9NUL7 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC21.13■□□□□ 0.97
DDX28Q9NUL7 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
DDX28Q9NUL7 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC21.13■□□□□ 0.97
DDX28Q9NUL7 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC21.13■□□□□ 0.97
DDX28Q9NUL7 AC092296.2-201ENST00000589470 999 ntBASIC21.13■□□□□ 0.97
DDX28Q9NUL7 MOB2-207ENST00000614710 705 ntTSL 5 BASIC21.13■□□□□ 0.97
DDX28Q9NUL7 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
DDX28Q9NUL7 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
DDX28Q9NUL7 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC21.13■□□□□ 0.97
DDX28Q9NUL7 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
DDX28Q9NUL7 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
DDX28Q9NUL7 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC21.13■□□□□ 0.97
DDX28Q9NUL7 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
DDX28Q9NUL7 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC21.12■□□□□ 0.97
DDX28Q9NUL7 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
DDX28Q9NUL7 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
DDX28Q9NUL7 AC096887.2-201ENST00000623443 1957 ntBASIC21.12■□□□□ 0.97
DDX28Q9NUL7 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
DDX28Q9NUL7 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
DDX28Q9NUL7 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC21.12■□□□□ 0.97
DDX28Q9NUL7 PFN2-211ENST00000489155 636 ntTSL 4 BASIC21.12■□□□□ 0.97
DDX28Q9NUL7 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC21.12■□□□□ 0.97
DDX28Q9NUL7 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
DDX28Q9NUL7 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
DDX28Q9NUL7 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
DDX28Q9NUL7 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
DDX28Q9NUL7 MED17-227ENST00000640521 2047 ntTSL 5 BASIC21.11■□□□□ 0.97
DDX28Q9NUL7 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC21.11■□□□□ 0.97
DDX28Q9NUL7 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC21.11■□□□□ 0.97
DDX28Q9NUL7 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC21.11■□□□□ 0.97
DDX28Q9NUL7 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
DDX28Q9NUL7 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC21.11■□□□□ 0.97
DDX28Q9NUL7 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
DDX28Q9NUL7 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 113.3 ms