Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CHMP1AQ9HD42 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CHMP1AQ9HD42 CASK-201ENST00000378154 2494 ntTSL 5 BASIC20.02■□□□□ 0.8
CHMP1AQ9HD42 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
CHMP1AQ9HD42 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC20.02■□□□□ 0.79
CHMP1AQ9HD42 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
CHMP1AQ9HD42 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CHMP1AQ9HD42 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CHMP1AQ9HD42 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CHMP1AQ9HD42 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CHMP1AQ9HD42 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC20.01■□□□□ 0.79
CHMP1AQ9HD42 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC20.01■□□□□ 0.79
CHMP1AQ9HD42 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CHMP1AQ9HD42 AC068473.5-201ENST00000616428 2072 ntBASIC20.01■□□□□ 0.79
CHMP1AQ9HD42 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CHMP1AQ9HD42 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CHMP1AQ9HD42 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CHMP1AQ9HD42 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC20■□□□□ 0.79
CHMP1AQ9HD42 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CHMP1AQ9HD42 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC20■□□□□ 0.79
CHMP1AQ9HD42 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC20■□□□□ 0.79
CHMP1AQ9HD42 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
CHMP1AQ9HD42 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CHMP1AQ9HD42 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CHMP1AQ9HD42 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC19.99■□□□□ 0.79
CHMP1AQ9HD42 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CHMP1AQ9HD42 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CHMP1AQ9HD42 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CHMP1AQ9HD42 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC19.99■□□□□ 0.79
CHMP1AQ9HD42 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
CHMP1AQ9HD42 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
CHMP1AQ9HD42 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CHMP1AQ9HD42 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CHMP1AQ9HD42 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CHMP1AQ9HD42 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC19.98■□□□□ 0.79
CHMP1AQ9HD42 AP003733.4-201ENST00000623785 1697 ntBASIC19.98■□□□□ 0.79
CHMP1AQ9HD42 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
CHMP1AQ9HD42 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CHMP1AQ9HD42 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CHMP1AQ9HD42 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
CHMP1AQ9HD42 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CHMP1AQ9HD42 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CHMP1AQ9HD42 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
CHMP1AQ9HD42 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC19.97■□□□□ 0.79
CHMP1AQ9HD42 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
CHMP1AQ9HD42 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
CHMP1AQ9HD42 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
CHMP1AQ9HD42 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CHMP1AQ9HD42 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CHMP1AQ9HD42 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CHMP1AQ9HD42 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
CHMP1AQ9HD42 AC079834.2-201ENST00000609776 1949 ntBASIC19.96■□□□□ 0.79
CHMP1AQ9HD42 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
CHMP1AQ9HD42 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
CHMP1AQ9HD42 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC19.96■□□□□ 0.79
CHMP1AQ9HD42 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
CHMP1AQ9HD42 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
CHMP1AQ9HD42 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
CHMP1AQ9HD42 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CHMP1AQ9HD42 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CHMP1AQ9HD42 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CHMP1AQ9HD42 LINC00543-201ENST00000567234 1845 ntBASIC19.95■□□□□ 0.78
CHMP1AQ9HD42 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
CHMP1AQ9HD42 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC19.95■□□□□ 0.78
CHMP1AQ9HD42 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC19.95■□□□□ 0.78
CHMP1AQ9HD42 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
CHMP1AQ9HD42 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC19.95■□□□□ 0.78
CHMP1AQ9HD42 LINC01124-201ENST00000409786 2117 ntBASIC19.94■□□□□ 0.78
CHMP1AQ9HD42 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC19.94■□□□□ 0.78
CHMP1AQ9HD42 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CHMP1AQ9HD42 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CHMP1AQ9HD42 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CHMP1AQ9HD42 PFN2-211ENST00000489155 636 ntTSL 4 BASIC19.94■□□□□ 0.78
CHMP1AQ9HD42 MIR3960-201ENST00000583311 91 ntBASIC19.94■□□□□ 0.78
CHMP1AQ9HD42 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC19.94■□□□□ 0.78
CHMP1AQ9HD42 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC19.94■□□□□ 0.78
CHMP1AQ9HD42 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC19.94■□□□□ 0.78
CHMP1AQ9HD42 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CHMP1AQ9HD42 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CHMP1AQ9HD42 SLC6A10P-202ENST00000431994 2058 ntBASIC19.93■□□□□ 0.78
CHMP1AQ9HD42 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC19.93■□□□□ 0.78
CHMP1AQ9HD42 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC19.93■□□□□ 0.78
CHMP1AQ9HD42 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CHMP1AQ9HD42 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC19.93■□□□□ 0.78
CHMP1AQ9HD42 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC19.93■□□□□ 0.78
CHMP1AQ9HD42 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC19.93■□□□□ 0.78
CHMP1AQ9HD42 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
CHMP1AQ9HD42 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC19.93■□□□□ 0.78
CHMP1AQ9HD42 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
CHMP1AQ9HD42 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CHMP1AQ9HD42 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CHMP1AQ9HD42 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
CHMP1AQ9HD42 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CHMP1AQ9HD42 AL157400.5-201ENST00000507624 621 ntBASIC19.92■□□□□ 0.78
CHMP1AQ9HD42 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC19.92■□□□□ 0.78
CHMP1AQ9HD42 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CHMP1AQ9HD42 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CHMP1AQ9HD42 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
CHMP1AQ9HD42 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
CHMP1AQ9HD42 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms