Protein–RNA interactions for Protein: Q9HAW0

BRF2, Transcription factor IIIB 50 kDa subunit, humanhuman

Predictions only

Length 419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF2Q9HAW0 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC22.47■■□□□ 1.19
BRF2Q9HAW0 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC22.47■■□□□ 1.19
BRF2Q9HAW0 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC22.47■■□□□ 1.19
BRF2Q9HAW0 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC22.47■■□□□ 1.19
BRF2Q9HAW0 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
BRF2Q9HAW0 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC22.47■■□□□ 1.19
BRF2Q9HAW0 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
BRF2Q9HAW0 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC22.46■■□□□ 1.19
BRF2Q9HAW0 BRD4-212ENST00000630599 726 ntTSL 2 BASIC22.46■■□□□ 1.19
BRF2Q9HAW0 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
BRF2Q9HAW0 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC22.46■■□□□ 1.19
BRF2Q9HAW0 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC22.46■■□□□ 1.19
BRF2Q9HAW0 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
BRF2Q9HAW0 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
BRF2Q9HAW0 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
BRF2Q9HAW0 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
BRF2Q9HAW0 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC22.45■■□□□ 1.18
BRF2Q9HAW0 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
BRF2Q9HAW0 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
BRF2Q9HAW0 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC22.44■■□□□ 1.18
BRF2Q9HAW0 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
BRF2Q9HAW0 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
BRF2Q9HAW0 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
BRF2Q9HAW0 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC22.44■■□□□ 1.18
BRF2Q9HAW0 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
BRF2Q9HAW0 AC129492.7-201ENST00000622992 756 ntBASIC22.44■■□□□ 1.18
BRF2Q9HAW0 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC22.43■■□□□ 1.18
BRF2Q9HAW0 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
BRF2Q9HAW0 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
BRF2Q9HAW0 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC22.43■■□□□ 1.18
BRF2Q9HAW0 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
BRF2Q9HAW0 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
BRF2Q9HAW0 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC22.43■■□□□ 1.18
BRF2Q9HAW0 ABHD17AP5-201ENST00000580133 923 ntBASIC22.43■■□□□ 1.18
BRF2Q9HAW0 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
BRF2Q9HAW0 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
BRF2Q9HAW0 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
BRF2Q9HAW0 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC22.43■■□□□ 1.18
BRF2Q9HAW0 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC22.42■■□□□ 1.18
BRF2Q9HAW0 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
BRF2Q9HAW0 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
BRF2Q9HAW0 KRT18P60-201ENST00000312876 1297 ntBASIC22.42■■□□□ 1.18
BRF2Q9HAW0 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
BRF2Q9HAW0 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
BRF2Q9HAW0 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
BRF2Q9HAW0 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC22.41■■□□□ 1.18
BRF2Q9HAW0 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC22.41■■□□□ 1.18
BRF2Q9HAW0 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC22.41■■□□□ 1.18
BRF2Q9HAW0 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC22.41■■□□□ 1.18
BRF2Q9HAW0 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC22.41■■□□□ 1.18
BRF2Q9HAW0 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
BRF2Q9HAW0 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC22.41■■□□□ 1.18
BRF2Q9HAW0 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC22.41■■□□□ 1.18
BRF2Q9HAW0 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
BRF2Q9HAW0 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
BRF2Q9HAW0 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
BRF2Q9HAW0 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
BRF2Q9HAW0 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
BRF2Q9HAW0 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC22.4■■□□□ 1.18
BRF2Q9HAW0 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC22.4■■□□□ 1.18
BRF2Q9HAW0 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
BRF2Q9HAW0 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
BRF2Q9HAW0 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
BRF2Q9HAW0 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC22.4■■□□□ 1.18
BRF2Q9HAW0 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC22.4■■□□□ 1.18
BRF2Q9HAW0 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC22.4■■□□□ 1.18
BRF2Q9HAW0 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC22.39■■□□□ 1.18
BRF2Q9HAW0 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC22.39■■□□□ 1.18
BRF2Q9HAW0 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
BRF2Q9HAW0 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC22.39■■□□□ 1.18
BRF2Q9HAW0 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
BRF2Q9HAW0 AL592295.1-201ENST00000400984 884 ntBASIC22.39■■□□□ 1.17
BRF2Q9HAW0 HLA-L-211ENST00000482052 1765 ntBASIC22.39■■□□□ 1.17
BRF2Q9HAW0 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
BRF2Q9HAW0 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
BRF2Q9HAW0 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
BRF2Q9HAW0 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
BRF2Q9HAW0 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC22.38■■□□□ 1.17
BRF2Q9HAW0 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
BRF2Q9HAW0 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC22.38■■□□□ 1.17
BRF2Q9HAW0 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
BRF2Q9HAW0 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC22.38■■□□□ 1.17
BRF2Q9HAW0 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
BRF2Q9HAW0 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC22.38■■□□□ 1.17
BRF2Q9HAW0 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC22.37■■□□□ 1.17
BRF2Q9HAW0 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
BRF2Q9HAW0 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
BRF2Q9HAW0 NTF6A-201ENST00000591175 560 ntBASIC22.37■■□□□ 1.17
BRF2Q9HAW0 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC22.37■■□□□ 1.17
BRF2Q9HAW0 THRA-202ENST00000394121 2260 ntTSL 2 BASIC22.37■■□□□ 1.17
BRF2Q9HAW0 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
BRF2Q9HAW0 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC22.36■■□□□ 1.17
BRF2Q9HAW0 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
BRF2Q9HAW0 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC22.36■■□□□ 1.17
BRF2Q9HAW0 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC22.36■■□□□ 1.17
BRF2Q9HAW0 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC22.36■■□□□ 1.17
BRF2Q9HAW0 LONRF2P2-201ENST00000439212 571 ntBASIC22.36■■□□□ 1.17
BRF2Q9HAW0 SSSCA1-AS1-201ENST00000567594 614 ntBASIC22.36■■□□□ 1.17
BRF2Q9HAW0 TMEM202-AS1-202ENST00000565181 2325 ntBASIC22.36■■□□□ 1.17
BRF2Q9HAW0 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC22.35■■□□□ 1.17
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms