Protein–RNA interactions for Protein: Q9H6T3

RPAP3, RNA polymerase II-associated protein 3, humanhuman

Predicted RBP Predictions only

Length 665 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPAP3Q9H6T3 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC27.33■■□□□ 1.97
RPAP3Q9H6T3 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC27.33■■□□□ 1.97
RPAP3Q9H6T3 AL136116.3-201ENST00000402907 1138 ntBASIC27.33■■□□□ 1.97
RPAP3Q9H6T3 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC27.33■■□□□ 1.97
RPAP3Q9H6T3 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC27.33■■□□□ 1.97
RPAP3Q9H6T3 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC27.33■■□□□ 1.97
RPAP3Q9H6T3 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
RPAP3Q9H6T3 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC27.32■■□□□ 1.96
RPAP3Q9H6T3 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC27.32■■□□□ 1.96
RPAP3Q9H6T3 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC27.32■■□□□ 1.96
RPAP3Q9H6T3 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
RPAP3Q9H6T3 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
RPAP3Q9H6T3 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC27.32■■□□□ 1.96
RPAP3Q9H6T3 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC27.31■■□□□ 1.96
RPAP3Q9H6T3 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC27.31■■□□□ 1.96
RPAP3Q9H6T3 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC27.31■■□□□ 1.96
RPAP3Q9H6T3 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC27.31■■□□□ 1.96
RPAP3Q9H6T3 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
RPAP3Q9H6T3 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
RPAP3Q9H6T3 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC27.3■■□□□ 1.96
RPAP3Q9H6T3 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC27.3■■□□□ 1.96
RPAP3Q9H6T3 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC27.3■■□□□ 1.96
RPAP3Q9H6T3 AL356740.2-201ENST00000601559 647 ntBASIC27.3■■□□□ 1.96
RPAP3Q9H6T3 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC27.3■■□□□ 1.96
RPAP3Q9H6T3 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC27.3■■□□□ 1.96
RPAP3Q9H6T3 AC090877.2-201ENST00000558441 1738 ntBASIC27.3■■□□□ 1.96
RPAP3Q9H6T3 AC097639.1-201ENST00000565519 1891 ntBASIC27.3■■□□□ 1.96
RPAP3Q9H6T3 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC27.29■■□□□ 1.96
RPAP3Q9H6T3 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC27.29■■□□□ 1.96
RPAP3Q9H6T3 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
RPAP3Q9H6T3 MIR638-201ENST00000385237 100 ntBASIC27.29■■□□□ 1.96
RPAP3Q9H6T3 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC27.29■■□□□ 1.96
RPAP3Q9H6T3 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
RPAP3Q9H6T3 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
RPAP3Q9H6T3 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC27.29■■□□□ 1.96
RPAP3Q9H6T3 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC27.28■■□□□ 1.96
RPAP3Q9H6T3 NALT1-201ENST00000429224 738 ntTSL 5 BASIC27.28■■□□□ 1.96
RPAP3Q9H6T3 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC27.28■■□□□ 1.96
RPAP3Q9H6T3 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
RPAP3Q9H6T3 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC27.28■■□□□ 1.96
RPAP3Q9H6T3 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC27.28■■□□□ 1.96
RPAP3Q9H6T3 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC27.27■■□□□ 1.96
RPAP3Q9H6T3 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC27.27■■□□□ 1.96
RPAP3Q9H6T3 CD72-202ENST00000378430 585 ntTSL 3 BASIC27.27■■□□□ 1.96
RPAP3Q9H6T3 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC27.27■■□□□ 1.96
RPAP3Q9H6T3 AL139246.5-201ENST00000606645 996 ntBASIC27.27■■□□□ 1.96
RPAP3Q9H6T3 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC27.27■■□□□ 1.96
RPAP3Q9H6T3 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC27.27■■□□□ 1.96
RPAP3Q9H6T3 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC27.27■■□□□ 1.96
RPAP3Q9H6T3 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC27.26■■□□□ 1.95
RPAP3Q9H6T3 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
RPAP3Q9H6T3 AK3-203ENST00000447596 705 ntTSL 2 BASIC27.26■■□□□ 1.95
RPAP3Q9H6T3 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC27.26■■□□□ 1.95
RPAP3Q9H6T3 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC27.26■■□□□ 1.95
RPAP3Q9H6T3 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC27.26■■□□□ 1.95
RPAP3Q9H6T3 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC27.26■■□□□ 1.95
RPAP3Q9H6T3 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC27.25■■□□□ 1.95
RPAP3Q9H6T3 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC27.25■■□□□ 1.95
RPAP3Q9H6T3 MIR4466-201ENST00000606121 54 ntBASIC27.25■■□□□ 1.95
RPAP3Q9H6T3 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC27.25■■□□□ 1.95
RPAP3Q9H6T3 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC27.25■■□□□ 1.95
RPAP3Q9H6T3 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC27.24■■□□□ 1.95
RPAP3Q9H6T3 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC27.24■■□□□ 1.95
RPAP3Q9H6T3 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
RPAP3Q9H6T3 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC27.24■■□□□ 1.95
RPAP3Q9H6T3 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC27.24■■□□□ 1.95
RPAP3Q9H6T3 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC27.24■■□□□ 1.95
RPAP3Q9H6T3 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC27.23■■□□□ 1.95
RPAP3Q9H6T3 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
RPAP3Q9H6T3 AC010501.1-201ENST00000606270 1962 ntBASIC27.22■■□□□ 1.95
RPAP3Q9H6T3 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC27.22■■□□□ 1.95
RPAP3Q9H6T3 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC27.22■■□□□ 1.95
RPAP3Q9H6T3 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC27.22■■□□□ 1.95
RPAP3Q9H6T3 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC27.22■■□□□ 1.95
RPAP3Q9H6T3 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC27.22■■□□□ 1.95
RPAP3Q9H6T3 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC27.22■■□□□ 1.95
RPAP3Q9H6T3 QDPR-206ENST00000508623 601 ntTSL 3 BASIC27.22■■□□□ 1.95
RPAP3Q9H6T3 RALB-208ENST00000631312 311 ntTSL 5 BASIC27.22■■□□□ 1.95
RPAP3Q9H6T3 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
RPAP3Q9H6T3 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
RPAP3Q9H6T3 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
RPAP3Q9H6T3 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
RPAP3Q9H6T3 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
RPAP3Q9H6T3 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
RPAP3Q9H6T3 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC27.21■■□□□ 1.95
RPAP3Q9H6T3 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
RPAP3Q9H6T3 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC27.21■■□□□ 1.95
RPAP3Q9H6T3 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC27.21■■□□□ 1.95
RPAP3Q9H6T3 AL512631.2-201ENST00000604634 923 ntBASIC27.21■■□□□ 1.95
RPAP3Q9H6T3 SNX5-217ENST00000606557 1087 ntBASIC27.21■■□□□ 1.95
RPAP3Q9H6T3 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC27.21■■□□□ 1.95
RPAP3Q9H6T3 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
RPAP3Q9H6T3 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC27.2■■□□□ 1.94
RPAP3Q9H6T3 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.94
RPAP3Q9H6T3 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.94
RPAP3Q9H6T3 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC27.2■■□□□ 1.94
RPAP3Q9H6T3 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC27.2■■□□□ 1.94
RPAP3Q9H6T3 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
RPAP3Q9H6T3 MIR935-201ENST00000401179 91 ntBASIC27.19■■□□□ 1.94
RPAP3Q9H6T3 TFPT-201ENST00000391757 774 ntTSL 5 BASIC27.18■■□□□ 1.94
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms