Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
MMP28Q9H239 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC20.54■□□□□ 0.88
MMP28Q9H239 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
MMP28Q9H239 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
MMP28Q9H239 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
MMP28Q9H239 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
MMP28Q9H239 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
MMP28Q9H239 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC20.54■□□□□ 0.88
MMP28Q9H239 MIR4449-201ENST00000578365 66 ntBASIC20.54■□□□□ 0.88
MMP28Q9H239 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
MMP28Q9H239 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
MMP28Q9H239 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
MMP28Q9H239 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
MMP28Q9H239 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC20.54■□□□□ 0.88
MMP28Q9H239 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
MMP28Q9H239 RPS2-210ENST00000530225 765 ntTSL 2 BASIC20.53■□□□□ 0.88
MMP28Q9H239 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC20.53■□□□□ 0.88
MMP28Q9H239 AC016575.1-201ENST00000607026 382 ntBASIC20.53■□□□□ 0.88
MMP28Q9H239 CR559946.2-201ENST00000623684 991 ntBASIC20.53■□□□□ 0.88
MMP28Q9H239 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
MMP28Q9H239 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
MMP28Q9H239 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
MMP28Q9H239 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
MMP28Q9H239 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC20.53■□□□□ 0.88
MMP28Q9H239 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
MMP28Q9H239 USP48-205ENST00000421625 2818 ntTSL 2 BASIC20.53■□□□□ 0.88
MMP28Q9H239 EFS-203ENST00000429593 2610 ntTSL 2 BASIC20.53■□□□□ 0.88
MMP28Q9H239 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
MMP28Q9H239 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
MMP28Q9H239 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
MMP28Q9H239 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
MMP28Q9H239 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
MMP28Q9H239 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
MMP28Q9H239 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
MMP28Q9H239 MIR3648-2-201ENST00000581792 180 ntBASIC20.52■□□□□ 0.88
MMP28Q9H239 MIR3648-1-201ENST00000615959 180 ntBASIC20.52■□□□□ 0.88
MMP28Q9H239 GDI1-215ENST00000630693 786 ntTSL 4 BASIC20.52■□□□□ 0.88
MMP28Q9H239 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
MMP28Q9H239 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
MMP28Q9H239 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
MMP28Q9H239 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC20.51■□□□□ 0.87
MMP28Q9H239 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
MMP28Q9H239 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
MMP28Q9H239 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
MMP28Q9H239 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC20.51■□□□□ 0.87
MMP28Q9H239 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
MMP28Q9H239 EP400NL-214ENST00000641289 2402 ntBASIC20.51■□□□□ 0.87
MMP28Q9H239 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
MMP28Q9H239 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
MMP28Q9H239 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
MMP28Q9H239 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
MMP28Q9H239 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
MMP28Q9H239 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
MMP28Q9H239 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
MMP28Q9H239 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC20.5■□□□□ 0.87
MMP28Q9H239 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC20.49■□□□□ 0.87
MMP28Q9H239 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
MMP28Q9H239 AC008813.1-201ENST00000536597 885 ntBASIC20.49■□□□□ 0.87
MMP28Q9H239 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC20.49■□□□□ 0.87
MMP28Q9H239 GALC-202ENST00000393568 2054 ntTSL 2 BASIC20.49■□□□□ 0.87
MMP28Q9H239 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
MMP28Q9H239 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
MMP28Q9H239 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
MMP28Q9H239 ABCB10P4-201ENST00000566803 2184 ntBASIC20.48■□□□□ 0.87
MMP28Q9H239 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
MMP28Q9H239 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC20.48■□□□□ 0.87
MMP28Q9H239 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC20.48■□□□□ 0.87
MMP28Q9H239 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
MMP28Q9H239 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
MMP28Q9H239 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
MMP28Q9H239 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
MMP28Q9H239 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC20.47■□□□□ 0.87
MMP28Q9H239 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
MMP28Q9H239 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
MMP28Q9H239 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
MMP28Q9H239 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
MMP28Q9H239 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
MMP28Q9H239 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC20.47■□□□□ 0.87
MMP28Q9H239 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
MMP28Q9H239 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC20.47■□□□□ 0.87
MMP28Q9H239 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
MMP28Q9H239 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
MMP28Q9H239 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
MMP28Q9H239 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
MMP28Q9H239 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
MMP28Q9H239 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
MMP28Q9H239 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.87
MMP28Q9H239 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC20.45■□□□□ 0.86
MMP28Q9H239 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
MMP28Q9H239 NFE2L3P1-201ENST00000588207 1959 ntBASIC20.45■□□□□ 0.86
MMP28Q9H239 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
MMP28Q9H239 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
MMP28Q9H239 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
MMP28Q9H239 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
MMP28Q9H239 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
MMP28Q9H239 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
MMP28Q9H239 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
MMP28Q9H239 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC20.44■□□□□ 0.86
MMP28Q9H239 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
MMP28Q9H239 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 51.2 ms