Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
UPF3AQ9H1J1 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC26.4■■□□□ 1.82
UPF3AQ9H1J1 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC26.4■■□□□ 1.82
UPF3AQ9H1J1 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
UPF3AQ9H1J1 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
UPF3AQ9H1J1 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC26.39■■□□□ 1.82
UPF3AQ9H1J1 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
UPF3AQ9H1J1 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC26.39■■□□□ 1.82
UPF3AQ9H1J1 CLTA-206ENST00000466396 695 ntTSL 2 BASIC26.39■■□□□ 1.82
UPF3AQ9H1J1 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC26.39■■□□□ 1.82
UPF3AQ9H1J1 SNX5-217ENST00000606557 1087 ntBASIC26.39■■□□□ 1.82
UPF3AQ9H1J1 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC26.39■■□□□ 1.81
UPF3AQ9H1J1 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC26.39■■□□□ 1.81
UPF3AQ9H1J1 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
UPF3AQ9H1J1 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
UPF3AQ9H1J1 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
UPF3AQ9H1J1 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
UPF3AQ9H1J1 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC26.37■■□□□ 1.81
UPF3AQ9H1J1 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC26.37■■□□□ 1.81
UPF3AQ9H1J1 MIR6722-201ENST00000617286 78 ntBASIC26.37■■□□□ 1.81
UPF3AQ9H1J1 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC26.37■■□□□ 1.81
UPF3AQ9H1J1 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC26.37■■□□□ 1.81
UPF3AQ9H1J1 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
UPF3AQ9H1J1 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
UPF3AQ9H1J1 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC26.36■■□□□ 1.81
UPF3AQ9H1J1 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC26.36■■□□□ 1.81
UPF3AQ9H1J1 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC26.36■■□□□ 1.81
UPF3AQ9H1J1 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
UPF3AQ9H1J1 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
UPF3AQ9H1J1 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC26.35■■□□□ 1.81
UPF3AQ9H1J1 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC26.35■■□□□ 1.81
UPF3AQ9H1J1 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC26.35■■□□□ 1.81
UPF3AQ9H1J1 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
UPF3AQ9H1J1 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
UPF3AQ9H1J1 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC26.34■■□□□ 1.81
UPF3AQ9H1J1 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC26.34■■□□□ 1.81
UPF3AQ9H1J1 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC26.34■■□□□ 1.81
UPF3AQ9H1J1 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC26.34■■□□□ 1.81
UPF3AQ9H1J1 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC26.33■■□□□ 1.81
UPF3AQ9H1J1 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
UPF3AQ9H1J1 AC106739.1-201ENST00000617035 715 ntBASIC26.33■■□□□ 1.81
UPF3AQ9H1J1 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
UPF3AQ9H1J1 AC090877.2-201ENST00000558441 1738 ntBASIC26.33■■□□□ 1.81
UPF3AQ9H1J1 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
UPF3AQ9H1J1 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC26.32■■□□□ 1.8
UPF3AQ9H1J1 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
UPF3AQ9H1J1 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC26.32■■□□□ 1.8
UPF3AQ9H1J1 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC26.32■■□□□ 1.8
UPF3AQ9H1J1 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
UPF3AQ9H1J1 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
UPF3AQ9H1J1 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC26.31■■□□□ 1.8
UPF3AQ9H1J1 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
UPF3AQ9H1J1 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC26.31■■□□□ 1.8
UPF3AQ9H1J1 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
UPF3AQ9H1J1 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
UPF3AQ9H1J1 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC26.3■■□□□ 1.8
UPF3AQ9H1J1 EBPL-204ENST00000378272 766 ntTSL 3 BASIC26.3■■□□□ 1.8
UPF3AQ9H1J1 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC26.3■■□□□ 1.8
UPF3AQ9H1J1 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
UPF3AQ9H1J1 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC26.3■■□□□ 1.8
UPF3AQ9H1J1 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
UPF3AQ9H1J1 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC26.29■■□□□ 1.8
UPF3AQ9H1J1 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC26.29■■□□□ 1.8
UPF3AQ9H1J1 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC26.29■■□□□ 1.8
UPF3AQ9H1J1 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
UPF3AQ9H1J1 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC26.28■■□□□ 1.8
UPF3AQ9H1J1 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
UPF3AQ9H1J1 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
UPF3AQ9H1J1 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC26.27■■□□□ 1.8
UPF3AQ9H1J1 PBX2P1-201ENST00000493219 1291 ntBASIC26.27■■□□□ 1.8
UPF3AQ9H1J1 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
UPF3AQ9H1J1 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
UPF3AQ9H1J1 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
UPF3AQ9H1J1 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
UPF3AQ9H1J1 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC26.26■■□□□ 1.79
UPF3AQ9H1J1 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC26.26■■□□□ 1.79
UPF3AQ9H1J1 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC26.26■■□□□ 1.79
UPF3AQ9H1J1 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
UPF3AQ9H1J1 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
UPF3AQ9H1J1 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC26.25■■□□□ 1.79
UPF3AQ9H1J1 GUK1-205ENST00000366722 850 ntTSL 3 BASIC26.25■■□□□ 1.79
UPF3AQ9H1J1 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC26.25■■□□□ 1.79
UPF3AQ9H1J1 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC26.25■■□□□ 1.79
UPF3AQ9H1J1 LBH-205ENST00000407930 756 ntTSL 2 BASIC26.25■■□□□ 1.79
UPF3AQ9H1J1 ZNRF2P3-201ENST00000424200 374 ntBASIC26.25■■□□□ 1.79
UPF3AQ9H1J1 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC26.25■■□□□ 1.79
UPF3AQ9H1J1 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC26.25■■□□□ 1.79
UPF3AQ9H1J1 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC26.25■■□□□ 1.79
UPF3AQ9H1J1 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
UPF3AQ9H1J1 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC26.24■■□□□ 1.79
UPF3AQ9H1J1 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC26.24■■□□□ 1.79
UPF3AQ9H1J1 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC26.24■■□□□ 1.79
UPF3AQ9H1J1 AL031432.3-201ENST00000607698 485 ntBASIC26.24■■□□□ 1.79
UPF3AQ9H1J1 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
UPF3AQ9H1J1 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
UPF3AQ9H1J1 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC26.23■■□□□ 1.79
UPF3AQ9H1J1 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
UPF3AQ9H1J1 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC26.23■■□□□ 1.79
UPF3AQ9H1J1 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
UPF3AQ9H1J1 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC26.23■■□□□ 1.79
Retrieved 100 of 98,524 protein–RNA pairs in 44.7 ms