Protein–RNA interactions for Protein: Q8WU17

RNF139, E3 ubiquitin-protein ligase RNF139, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF139Q8WU17 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
RNF139Q8WU17 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC24.63■■□□□ 1.53
RNF139Q8WU17 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
RNF139Q8WU17 KRT18P24-201ENST00000344739 1156 ntBASIC24.63■■□□□ 1.53
RNF139Q8WU17 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
RNF139Q8WU17 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC24.63■■□□□ 1.53
RNF139Q8WU17 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
RNF139Q8WU17 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
RNF139Q8WU17 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC24.62■■□□□ 1.53
RNF139Q8WU17 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC24.62■■□□□ 1.53
RNF139Q8WU17 AC120024.1-201ENST00000562672 995 ntBASIC24.61■■□□□ 1.53
RNF139Q8WU17 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC24.61■■□□□ 1.53
RNF139Q8WU17 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC24.61■■□□□ 1.53
RNF139Q8WU17 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
RNF139Q8WU17 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC24.61■■□□□ 1.53
RNF139Q8WU17 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
RNF139Q8WU17 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC24.61■■□□□ 1.53
RNF139Q8WU17 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC24.6■■□□□ 1.53
RNF139Q8WU17 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC24.6■■□□□ 1.53
RNF139Q8WU17 TK2-216ENST00000564917 1156 ntTSL 3 BASIC24.6■■□□□ 1.53
RNF139Q8WU17 SSSCA1-AS1-201ENST00000567594 614 ntBASIC24.6■■□□□ 1.53
RNF139Q8WU17 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
RNF139Q8WU17 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
RNF139Q8WU17 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
RNF139Q8WU17 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
RNF139Q8WU17 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC24.59■■□□□ 1.53
RNF139Q8WU17 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
RNF139Q8WU17 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC24.59■■□□□ 1.53
RNF139Q8WU17 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
RNF139Q8WU17 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC24.58■■□□□ 1.53
RNF139Q8WU17 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC24.58■■□□□ 1.53
RNF139Q8WU17 PRTG-204ENST00000561292 833 ntTSL 3 BASIC24.58■■□□□ 1.53
RNF139Q8WU17 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
RNF139Q8WU17 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
RNF139Q8WU17 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC24.58■■□□□ 1.53
RNF139Q8WU17 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC24.58■■□□□ 1.53
RNF139Q8WU17 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC24.57■■□□□ 1.52
RNF139Q8WU17 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
RNF139Q8WU17 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
RNF139Q8WU17 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
RNF139Q8WU17 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
RNF139Q8WU17 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC24.57■■□□□ 1.52
RNF139Q8WU17 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
RNF139Q8WU17 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC24.57■■□□□ 1.52
RNF139Q8WU17 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC24.57■■□□□ 1.52
RNF139Q8WU17 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC24.57■■□□□ 1.52
RNF139Q8WU17 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
RNF139Q8WU17 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
RNF139Q8WU17 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
RNF139Q8WU17 AC009299.2-201ENST00000482477 511 ntBASIC24.56■■□□□ 1.52
RNF139Q8WU17 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
RNF139Q8WU17 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC24.56■■□□□ 1.52
RNF139Q8WU17 AC011551.1-201ENST00000614101 683 ntBASIC24.56■■□□□ 1.52
RNF139Q8WU17 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
RNF139Q8WU17 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
RNF139Q8WU17 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
RNF139Q8WU17 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC24.55■■□□□ 1.52
RNF139Q8WU17 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
RNF139Q8WU17 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC24.55■■□□□ 1.52
RNF139Q8WU17 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC24.55■■□□□ 1.52
RNF139Q8WU17 AL035685.1-201ENST00000636663 812 ntBASIC24.55■■□□□ 1.52
RNF139Q8WU17 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
RNF139Q8WU17 SLC6A10P-202ENST00000431994 2058 ntBASIC24.55■■□□□ 1.52
RNF139Q8WU17 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC24.55■■□□□ 1.52
RNF139Q8WU17 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC24.55■■□□□ 1.52
RNF139Q8WU17 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC24.54■■□□□ 1.52
RNF139Q8WU17 AC022211.4-201ENST00000625094 2161 ntBASIC24.54■■□□□ 1.52
RNF139Q8WU17 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
RNF139Q8WU17 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
RNF139Q8WU17 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
RNF139Q8WU17 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC24.53■■□□□ 1.52
RNF139Q8WU17 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC24.53■■□□□ 1.52
RNF139Q8WU17 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
RNF139Q8WU17 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC24.53■■□□□ 1.52
RNF139Q8WU17 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
RNF139Q8WU17 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC24.53■■□□□ 1.52
RNF139Q8WU17 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
RNF139Q8WU17 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC24.53■■□□□ 1.52
RNF139Q8WU17 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC24.53■■□□□ 1.52
RNF139Q8WU17 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC24.52■■□□□ 1.52
RNF139Q8WU17 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC24.52■■□□□ 1.52
RNF139Q8WU17 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
RNF139Q8WU17 RNF146-205ENST00000477776 762 ntTSL 3 BASIC24.52■■□□□ 1.52
RNF139Q8WU17 GAK-223ENST00000628912 497 ntTSL 5 BASIC24.52■■□□□ 1.52
RNF139Q8WU17 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
RNF139Q8WU17 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC24.52■■□□□ 1.52
RNF139Q8WU17 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC24.52■■□□□ 1.52
RNF139Q8WU17 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
RNF139Q8WU17 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
RNF139Q8WU17 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC24.51■■□□□ 1.51
RNF139Q8WU17 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
RNF139Q8WU17 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC24.51■■□□□ 1.51
RNF139Q8WU17 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC24.51■■□□□ 1.51
RNF139Q8WU17 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
RNF139Q8WU17 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC24.51■■□□□ 1.51
RNF139Q8WU17 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
RNF139Q8WU17 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC24.5■■□□□ 1.51
RNF139Q8WU17 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
RNF139Q8WU17 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
RNF139Q8WU17 AC090877.2-201ENST00000558441 1738 ntBASIC24.5■■□□□ 1.51
Retrieved 100 of 98,524 protein–RNA pairs in 46.9 ms