Protein–RNA interactions for Protein: Q8N1B4

VPS52, Vacuolar protein sorting-associated protein 52 homolog, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52Q8N1B4 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
VPS52Q8N1B4 TRIR-202ENST00000588213 841 ntTSL 3 BASIC25.39■■□□□ 1.66
VPS52Q8N1B4 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC25.39■■□□□ 1.66
VPS52Q8N1B4 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.65
VPS52Q8N1B4 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC25.39■■□□□ 1.65
VPS52Q8N1B4 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC25.38■■□□□ 1.65
VPS52Q8N1B4 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
VPS52Q8N1B4 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC25.38■■□□□ 1.65
VPS52Q8N1B4 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
VPS52Q8N1B4 SNAI3-AS1-204ENST00000567997 2048 ntBASIC25.38■■□□□ 1.65
VPS52Q8N1B4 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC25.38■■□□□ 1.65
VPS52Q8N1B4 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC25.38■■□□□ 1.65
VPS52Q8N1B4 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC25.38■■□□□ 1.65
VPS52Q8N1B4 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC25.38■■□□□ 1.65
VPS52Q8N1B4 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC25.38■■□□□ 1.65
VPS52Q8N1B4 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
VPS52Q8N1B4 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC25.37■■□□□ 1.65
VPS52Q8N1B4 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC25.37■■□□□ 1.65
VPS52Q8N1B4 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
VPS52Q8N1B4 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC25.36■■□□□ 1.65
VPS52Q8N1B4 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC25.36■■□□□ 1.65
VPS52Q8N1B4 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC25.36■■□□□ 1.65
VPS52Q8N1B4 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC25.36■■□□□ 1.65
VPS52Q8N1B4 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
VPS52Q8N1B4 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC25.36■■□□□ 1.65
VPS52Q8N1B4 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC25.36■■□□□ 1.65
VPS52Q8N1B4 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC25.36■■□□□ 1.65
VPS52Q8N1B4 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC25.35■■□□□ 1.65
VPS52Q8N1B4 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
VPS52Q8N1B4 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC25.35■■□□□ 1.65
VPS52Q8N1B4 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
VPS52Q8N1B4 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
VPS52Q8N1B4 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC25.35■■□□□ 1.65
VPS52Q8N1B4 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
VPS52Q8N1B4 GAK-223ENST00000628912 497 ntTSL 5 BASIC25.35■■□□□ 1.65
VPS52Q8N1B4 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
VPS52Q8N1B4 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
VPS52Q8N1B4 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC25.35■■□□□ 1.65
VPS52Q8N1B4 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC25.34■■□□□ 1.65
VPS52Q8N1B4 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC25.34■■□□□ 1.65
VPS52Q8N1B4 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC25.34■■□□□ 1.65
VPS52Q8N1B4 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC25.34■■□□□ 1.65
VPS52Q8N1B4 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC25.34■■□□□ 1.65
VPS52Q8N1B4 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
VPS52Q8N1B4 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC25.34■■□□□ 1.65
VPS52Q8N1B4 SRR-208ENST00000576848 588 ntTSL 4 BASIC25.34■■□□□ 1.65
VPS52Q8N1B4 AC010997.5-201ENST00000609182 354 ntBASIC25.34■■□□□ 1.65
VPS52Q8N1B4 AC011551.1-201ENST00000614101 683 ntBASIC25.34■■□□□ 1.65
VPS52Q8N1B4 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
VPS52Q8N1B4 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC25.33■■□□□ 1.65
VPS52Q8N1B4 RPP21-222ENST00000433076 577 ntTSL 2 BASIC25.33■■□□□ 1.65
VPS52Q8N1B4 AC131281.2-201ENST00000520478 145 ntBASIC25.33■■□□□ 1.65
VPS52Q8N1B4 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC25.33■■□□□ 1.65
VPS52Q8N1B4 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
VPS52Q8N1B4 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC25.33■■□□□ 1.65
VPS52Q8N1B4 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC25.33■■□□□ 1.64
VPS52Q8N1B4 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
VPS52Q8N1B4 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC25.32■■□□□ 1.64
VPS52Q8N1B4 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
VPS52Q8N1B4 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
VPS52Q8N1B4 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC25.31■■□□□ 1.64
VPS52Q8N1B4 MIR935-201ENST00000401179 91 ntBASIC25.31■■□□□ 1.64
VPS52Q8N1B4 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC25.31■■□□□ 1.64
VPS52Q8N1B4 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC25.3■■□□□ 1.64
VPS52Q8N1B4 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC25.3■■□□□ 1.64
VPS52Q8N1B4 SENP5-202ENST00000419026 973 ntTSL 3 BASIC25.3■■□□□ 1.64
VPS52Q8N1B4 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC25.3■■□□□ 1.64
VPS52Q8N1B4 MTDHP2-201ENST00000601468 714 ntBASIC25.3■■□□□ 1.64
VPS52Q8N1B4 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC25.3■■□□□ 1.64
VPS52Q8N1B4 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
VPS52Q8N1B4 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC25.3■■□□□ 1.64
VPS52Q8N1B4 MIR638-201ENST00000385237 100 ntBASIC25.29■■□□□ 1.64
VPS52Q8N1B4 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC25.29■■□□□ 1.64
VPS52Q8N1B4 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC25.29■■□□□ 1.64
VPS52Q8N1B4 AL117332.1-201ENST00000622628 974 ntBASIC25.29■■□□□ 1.64
VPS52Q8N1B4 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
VPS52Q8N1B4 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC25.28■■□□□ 1.64
VPS52Q8N1B4 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC25.28■■□□□ 1.64
VPS52Q8N1B4 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC25.28■■□□□ 1.64
VPS52Q8N1B4 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC25.28■■□□□ 1.64
VPS52Q8N1B4 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC25.28■■□□□ 1.64
VPS52Q8N1B4 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC25.28■■□□□ 1.64
VPS52Q8N1B4 MIR6724-1-201ENST00000616420 92 ntBASIC25.28■■□□□ 1.64
VPS52Q8N1B4 MIR6724-2-201ENST00000616483 92 ntBASIC25.28■■□□□ 1.64
VPS52Q8N1B4 MIR6724-4-201ENST00000617390 92 ntBASIC25.28■■□□□ 1.64
VPS52Q8N1B4 MIR6724-3-201ENST00000622482 92 ntBASIC25.28■■□□□ 1.64
VPS52Q8N1B4 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
VPS52Q8N1B4 AC091060.1-201ENST00000623524 1766 ntBASIC25.28■■□□□ 1.64
VPS52Q8N1B4 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC25.28■■□□□ 1.64
VPS52Q8N1B4 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
VPS52Q8N1B4 TK2-202ENST00000417693 1046 ntTSL 2 BASIC25.27■■□□□ 1.64
VPS52Q8N1B4 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC25.27■■□□□ 1.64
VPS52Q8N1B4 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
VPS52Q8N1B4 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC25.27■■□□□ 1.64
VPS52Q8N1B4 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC25.27■■□□□ 1.64
VPS52Q8N1B4 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC25.26■■□□□ 1.63
VPS52Q8N1B4 LSM4-201ENST00000252816 986 ntTSL 2 BASIC25.26■■□□□ 1.63
VPS52Q8N1B4 AL136116.3-201ENST00000402907 1138 ntBASIC25.26■■□□□ 1.63
VPS52Q8N1B4 NALT1-201ENST00000429224 738 ntTSL 5 BASIC25.26■■□□□ 1.63
VPS52Q8N1B4 MIR3621-201ENST00000580529 85 ntBASIC25.26■■□□□ 1.63
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms