Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC28.8■■■□□ 2.2
USP48Q86UV5 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC28.8■■■□□ 2.2
USP48Q86UV5 AC020928.2-201ENST00000588717 2197 ntBASIC28.79■■■□□ 2.2
USP48Q86UV5 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC28.79■■■□□ 2.2
USP48Q86UV5 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC28.79■■■□□ 2.2
USP48Q86UV5 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC28.79■■■□□ 2.2
USP48Q86UV5 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC28.79■■■□□ 2.2
USP48Q86UV5 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC28.79■■■□□ 2.2
USP48Q86UV5 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC28.79■■■□□ 2.2
USP48Q86UV5 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC28.79■■■□□ 2.2
USP48Q86UV5 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC28.79■■■□□ 2.2
USP48Q86UV5 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC28.79■■■□□ 2.2
USP48Q86UV5 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC28.79■■■□□ 2.2
USP48Q86UV5 MIR3621-201ENST00000580529 85 ntBASIC28.78■■■□□ 2.2
USP48Q86UV5 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC28.78■■■□□ 2.2
USP48Q86UV5 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC28.78■■■□□ 2.2
USP48Q86UV5 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC28.77■■■□□ 2.2
USP48Q86UV5 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC28.77■■■□□ 2.2
USP48Q86UV5 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC28.77■■■□□ 2.2
USP48Q86UV5 AC010997.5-201ENST00000609182 354 ntBASIC28.77■■■□□ 2.2
USP48Q86UV5 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC28.77■■■□□ 2.2
USP48Q86UV5 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC28.77■■■□□ 2.2
USP48Q86UV5 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.2
USP48Q86UV5 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.2
USP48Q86UV5 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC28.76■■■□□ 2.19
USP48Q86UV5 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC28.76■■■□□ 2.19
USP48Q86UV5 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.19
USP48Q86UV5 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC28.76■■■□□ 2.19
USP48Q86UV5 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC28.76■■■□□ 2.19
USP48Q86UV5 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.19
USP48Q86UV5 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC28.75■■■□□ 2.19
USP48Q86UV5 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC28.75■■■□□ 2.19
USP48Q86UV5 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC28.75■■■□□ 2.19
USP48Q86UV5 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC28.75■■■□□ 2.19
USP48Q86UV5 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC28.75■■■□□ 2.19
USP48Q86UV5 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC28.75■■■□□ 2.19
USP48Q86UV5 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
USP48Q86UV5 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC28.74■■■□□ 2.19
USP48Q86UV5 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
USP48Q86UV5 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC28.74■■■□□ 2.19
USP48Q86UV5 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
USP48Q86UV5 MIR4466-201ENST00000606121 54 ntBASIC28.74■■■□□ 2.19
USP48Q86UV5 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC28.74■■■□□ 2.19
USP48Q86UV5 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC28.73■■■□□ 2.19
USP48Q86UV5 AC092666.2-201ENST00000613287 246 ntBASIC28.73■■■□□ 2.19
USP48Q86UV5 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC28.73■■■□□ 2.19
USP48Q86UV5 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC28.72■■■□□ 2.19
USP48Q86UV5 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC28.72■■■□□ 2.19
USP48Q86UV5 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC28.72■■■□□ 2.19
USP48Q86UV5 MIR6724-1-201ENST00000616420 92 ntBASIC28.72■■■□□ 2.19
USP48Q86UV5 MIR6724-2-201ENST00000616483 92 ntBASIC28.72■■■□□ 2.19
USP48Q86UV5 MIR6724-4-201ENST00000617390 92 ntBASIC28.72■■■□□ 2.19
USP48Q86UV5 MIR6724-3-201ENST00000622482 92 ntBASIC28.72■■■□□ 2.19
USP48Q86UV5 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC28.71■■■□□ 2.19
USP48Q86UV5 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC28.71■■■□□ 2.19
USP48Q86UV5 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC28.71■■■□□ 2.19
USP48Q86UV5 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC28.7■■■□□ 2.19
USP48Q86UV5 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.19
USP48Q86UV5 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC28.7■■■□□ 2.19
USP48Q86UV5 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC28.7■■■□□ 2.19
USP48Q86UV5 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC28.7■■■□□ 2.18
USP48Q86UV5 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC28.7■■■□□ 2.18
USP48Q86UV5 MIR4281-201ENST00000580852 62 ntBASIC28.7■■■□□ 2.18
USP48Q86UV5 AL356740.2-201ENST00000601559 647 ntBASIC28.7■■■□□ 2.18
USP48Q86UV5 PKM-204ENST00000449901 2526 ntTSL 2 BASIC28.7■■■□□ 2.18
USP48Q86UV5 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC28.69■■■□□ 2.18
USP48Q86UV5 LSM4-201ENST00000252816 986 ntTSL 2 BASIC28.69■■■□□ 2.18
USP48Q86UV5 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC28.69■■■□□ 2.18
USP48Q86UV5 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC28.68■■■□□ 2.18
USP48Q86UV5 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC28.68■■■□□ 2.18
USP48Q86UV5 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC28.68■■■□□ 2.18
USP48Q86UV5 AC133561.4-201ENST00000566112 224 ntBASIC28.67■■■□□ 2.18
USP48Q86UV5 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC28.67■■■□□ 2.18
USP48Q86UV5 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC28.67■■■□□ 2.18
USP48Q86UV5 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
USP48Q86UV5 GUK1-205ENST00000366722 850 ntTSL 3 BASIC28.66■■■□□ 2.18
USP48Q86UV5 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC28.66■■■□□ 2.18
USP48Q86UV5 MTDHP2-201ENST00000601468 714 ntBASIC28.66■■■□□ 2.18
USP48Q86UV5 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC28.66■■■□□ 2.18
USP48Q86UV5 AC092803.2-201ENST00000564287 1899 ntBASIC28.66■■■□□ 2.18
USP48Q86UV5 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC28.65■■■□□ 2.18
USP48Q86UV5 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
USP48Q86UV5 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC28.65■■■□□ 2.18
USP48Q86UV5 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC28.65■■■□□ 2.18
USP48Q86UV5 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC28.65■■■□□ 2.18
USP48Q86UV5 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC28.65■■■□□ 2.18
USP48Q86UV5 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC28.65■■■□□ 2.18
USP48Q86UV5 DUSP8P4-201ENST00000399538 1761 ntBASIC28.65■■■□□ 2.18
USP48Q86UV5 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC28.64■■■□□ 2.18
USP48Q86UV5 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC28.64■■■□□ 2.18
USP48Q86UV5 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC28.64■■■□□ 2.18
USP48Q86UV5 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.18
USP48Q86UV5 AP004609.3-201ENST00000610705 1884 ntBASIC28.64■■■□□ 2.18
USP48Q86UV5 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.18
USP48Q86UV5 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC28.64■■■□□ 2.18
USP48Q86UV5 ZNRF2P3-201ENST00000424200 374 ntBASIC28.64■■■□□ 2.18
USP48Q86UV5 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC28.64■■■□□ 2.18
USP48Q86UV5 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.18
USP48Q86UV5 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC28.64■■■□□ 2.17
USP48Q86UV5 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.17
Retrieved 100 of 98,524 protein–RNA pairs in 14 ms