Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
LINC00643Q86TS7 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
LINC00643Q86TS7 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
LINC00643Q86TS7 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC14.81□□□□□ -0.04
LINC00643Q86TS7 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
LINC00643Q86TS7 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
LINC00643Q86TS7 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
LINC00643Q86TS7 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
LINC00643Q86TS7 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
LINC00643Q86TS7 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
LINC00643Q86TS7 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC14.8□□□□□ -0.04
LINC00643Q86TS7 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC14.8□□□□□ -0.04
LINC00643Q86TS7 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC14.8□□□□□ -0.04
LINC00643Q86TS7 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
LINC00643Q86TS7 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
LINC00643Q86TS7 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
LINC00643Q86TS7 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
LINC00643Q86TS7 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
LINC00643Q86TS7 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC14.79□□□□□ -0.04
LINC00643Q86TS7 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
LINC00643Q86TS7 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
LINC00643Q86TS7 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
LINC00643Q86TS7 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
LINC00643Q86TS7 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
LINC00643Q86TS7 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
LINC00643Q86TS7 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
LINC00643Q86TS7 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
LINC00643Q86TS7 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
LINC00643Q86TS7 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LINC00643Q86TS7 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC14.78□□□□□ -0.04
LINC00643Q86TS7 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC14.78□□□□□ -0.04
LINC00643Q86TS7 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
LINC00643Q86TS7 AP003733.4-201ENST00000623785 1697 ntBASIC14.78□□□□□ -0.04
LINC00643Q86TS7 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LINC00643Q86TS7 AC141586.4-201ENST00000624558 1573 ntBASIC14.78□□□□□ -0.04
LINC00643Q86TS7 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
LINC00643Q86TS7 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LINC00643Q86TS7 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LINC00643Q86TS7 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LINC00643Q86TS7 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
LINC00643Q86TS7 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
LINC00643Q86TS7 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LINC00643Q86TS7 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LINC00643Q86TS7 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
LINC00643Q86TS7 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
LINC00643Q86TS7 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
LINC00643Q86TS7 AC018358.1-201ENST00000631079 1402 ntBASIC14.77□□□□□ -0.04
LINC00643Q86TS7 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
LINC00643Q86TS7 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
LINC00643Q86TS7 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC14.77□□□□□ -0.05
LINC00643Q86TS7 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
LINC00643Q86TS7 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC14.77□□□□□ -0.05
LINC00643Q86TS7 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
LINC00643Q86TS7 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC14.77□□□□□ -0.05
LINC00643Q86TS7 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
LINC00643Q86TS7 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
LINC00643Q86TS7 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
LINC00643Q86TS7 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
LINC00643Q86TS7 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
LINC00643Q86TS7 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
LINC00643Q86TS7 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
LINC00643Q86TS7 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
LINC00643Q86TS7 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
LINC00643Q86TS7 AL137060.1-201ENST00000618151 2648 ntBASIC14.76□□□□□ -0.05
LINC00643Q86TS7 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
LINC00643Q86TS7 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
LINC00643Q86TS7 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
LINC00643Q86TS7 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC14.75□□□□□ -0.05
LINC00643Q86TS7 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC14.75□□□□□ -0.05
LINC00643Q86TS7 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
LINC00643Q86TS7 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC14.75□□□□□ -0.05
LINC00643Q86TS7 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
LINC00643Q86TS7 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
LINC00643Q86TS7 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
LINC00643Q86TS7 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC14.75□□□□□ -0.05
LINC00643Q86TS7 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC14.75□□□□□ -0.05
LINC00643Q86TS7 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
LINC00643Q86TS7 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
LINC00643Q86TS7 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC14.75□□□□□ -0.05
LINC00643Q86TS7 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
LINC00643Q86TS7 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC14.75□□□□□ -0.05
LINC00643Q86TS7 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
LINC00643Q86TS7 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
LINC00643Q86TS7 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC14.74□□□□□ -0.05
LINC00643Q86TS7 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
LINC00643Q86TS7 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC14.74□□□□□ -0.05
LINC00643Q86TS7 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
LINC00643Q86TS7 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
LINC00643Q86TS7 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
LINC00643Q86TS7 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
LINC00643Q86TS7 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC14.74□□□□□ -0.05
LINC00643Q86TS7 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
LINC00643Q86TS7 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC14.74□□□□□ -0.05
LINC00643Q86TS7 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
LINC00643Q86TS7 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
LINC00643Q86TS7 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
LINC00643Q86TS7 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC14.74□□□□□ -0.05
LINC00643Q86TS7 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
LINC00643Q86TS7 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
LINC00643Q86TS7 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 14.6 ms