Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC27.02■■□□□ 1.92
SH3RF1Q7Z6J0 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
SH3RF1Q7Z6J0 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC27.02■■□□□ 1.92
SH3RF1Q7Z6J0 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC27.01■■□□□ 1.92
SH3RF1Q7Z6J0 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC27.01■■□□□ 1.91
SH3RF1Q7Z6J0 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
SH3RF1Q7Z6J0 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
SH3RF1Q7Z6J0 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
SH3RF1Q7Z6J0 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC27.01■■□□□ 1.91
SH3RF1Q7Z6J0 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
SH3RF1Q7Z6J0 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC27■■□□□ 1.91
SH3RF1Q7Z6J0 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC27■■□□□ 1.91
SH3RF1Q7Z6J0 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC27■■□□□ 1.91
SH3RF1Q7Z6J0 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC27■■□□□ 1.91
SH3RF1Q7Z6J0 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC27■■□□□ 1.91
SH3RF1Q7Z6J0 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC27■■□□□ 1.91
SH3RF1Q7Z6J0 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC26.99■■□□□ 1.91
SH3RF1Q7Z6J0 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC26.99■■□□□ 1.91
SH3RF1Q7Z6J0 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC26.99■■□□□ 1.91
SH3RF1Q7Z6J0 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC26.99■■□□□ 1.91
SH3RF1Q7Z6J0 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC26.99■■□□□ 1.91
SH3RF1Q7Z6J0 KRT16P3-201ENST00000439127 1283 ntBASIC26.99■■□□□ 1.91
SH3RF1Q7Z6J0 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC26.99■■□□□ 1.91
SH3RF1Q7Z6J0 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC26.99■■□□□ 1.91
SH3RF1Q7Z6J0 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC26.99■■□□□ 1.91
SH3RF1Q7Z6J0 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC26.99■■□□□ 1.91
SH3RF1Q7Z6J0 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC26.99■■□□□ 1.91
SH3RF1Q7Z6J0 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC26.99■■□□□ 1.91
SH3RF1Q7Z6J0 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC26.99■■□□□ 1.91
SH3RF1Q7Z6J0 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
SH3RF1Q7Z6J0 BX664725.1-201ENST00000438252 379 ntBASIC26.98■■□□□ 1.91
SH3RF1Q7Z6J0 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC26.98■■□□□ 1.91
SH3RF1Q7Z6J0 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC26.98■■□□□ 1.91
SH3RF1Q7Z6J0 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
SH3RF1Q7Z6J0 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC26.97■■□□□ 1.91
SH3RF1Q7Z6J0 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC26.97■■□□□ 1.91
SH3RF1Q7Z6J0 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
SH3RF1Q7Z6J0 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
SH3RF1Q7Z6J0 SNAI3-AS1-204ENST00000567997 2048 ntBASIC26.97■■□□□ 1.91
SH3RF1Q7Z6J0 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
SH3RF1Q7Z6J0 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC26.96■■□□□ 1.91
SH3RF1Q7Z6J0 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC26.96■■□□□ 1.91
SH3RF1Q7Z6J0 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC26.96■■□□□ 1.91
SH3RF1Q7Z6J0 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC26.96■■□□□ 1.91
SH3RF1Q7Z6J0 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC26.96■■□□□ 1.91
SH3RF1Q7Z6J0 RALB-208ENST00000631312 311 ntTSL 5 BASIC26.96■■□□□ 1.91
SH3RF1Q7Z6J0 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC26.96■■□□□ 1.91
SH3RF1Q7Z6J0 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC26.95■■□□□ 1.91
SH3RF1Q7Z6J0 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.9
SH3RF1Q7Z6J0 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.9
SH3RF1Q7Z6J0 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC26.95■■□□□ 1.9
SH3RF1Q7Z6J0 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC26.95■■□□□ 1.9
SH3RF1Q7Z6J0 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC26.95■■□□□ 1.9
SH3RF1Q7Z6J0 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC26.95■■□□□ 1.9
SH3RF1Q7Z6J0 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.9
SH3RF1Q7Z6J0 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.9
SH3RF1Q7Z6J0 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC26.95■■□□□ 1.9
SH3RF1Q7Z6J0 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC26.94■■□□□ 1.9
SH3RF1Q7Z6J0 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC26.94■■□□□ 1.9
SH3RF1Q7Z6J0 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC26.94■■□□□ 1.9
SH3RF1Q7Z6J0 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
SH3RF1Q7Z6J0 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC26.94■■□□□ 1.9
SH3RF1Q7Z6J0 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC26.94■■□□□ 1.9
SH3RF1Q7Z6J0 AL139246.5-201ENST00000606645 996 ntBASIC26.94■■□□□ 1.9
SH3RF1Q7Z6J0 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC26.94■■□□□ 1.9
SH3RF1Q7Z6J0 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
SH3RF1Q7Z6J0 MED17-227ENST00000640521 2047 ntTSL 5 BASIC26.93■■□□□ 1.9
SH3RF1Q7Z6J0 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
SH3RF1Q7Z6J0 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC26.93■■□□□ 1.9
SH3RF1Q7Z6J0 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC26.92■■□□□ 1.9
SH3RF1Q7Z6J0 NALT1-201ENST00000429224 738 ntTSL 5 BASIC26.92■■□□□ 1.9
SH3RF1Q7Z6J0 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC26.92■■□□□ 1.9
SH3RF1Q7Z6J0 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC26.92■■□□□ 1.9
SH3RF1Q7Z6J0 AC142381.3-201ENST00000568208 1670 ntBASIC26.92■■□□□ 1.9
SH3RF1Q7Z6J0 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC26.92■■□□□ 1.9
SH3RF1Q7Z6J0 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC26.92■■□□□ 1.9
SH3RF1Q7Z6J0 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
SH3RF1Q7Z6J0 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
SH3RF1Q7Z6J0 AC022211.4-201ENST00000625094 2161 ntBASIC26.91■■□□□ 1.9
SH3RF1Q7Z6J0 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
SH3RF1Q7Z6J0 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC26.9■■□□□ 1.9
SH3RF1Q7Z6J0 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC26.9■■□□□ 1.9
SH3RF1Q7Z6J0 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC26.9■■□□□ 1.9
SH3RF1Q7Z6J0 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC26.9■■□□□ 1.9
SH3RF1Q7Z6J0 TSPY9P-201ENST00000440215 945 ntBASIC26.9■■□□□ 1.9
SH3RF1Q7Z6J0 TSPY11P-201ENST00000442607 1045 ntBASIC26.9■■□□□ 1.9
SH3RF1Q7Z6J0 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC26.9■■□□□ 1.9
SH3RF1Q7Z6J0 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC26.9■■□□□ 1.9
SH3RF1Q7Z6J0 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
SH3RF1Q7Z6J0 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC26.9■■□□□ 1.9
SH3RF1Q7Z6J0 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
SH3RF1Q7Z6J0 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC26.89■■□□□ 1.9
SH3RF1Q7Z6J0 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC26.89■■□□□ 1.9
SH3RF1Q7Z6J0 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC26.89■■□□□ 1.9
SH3RF1Q7Z6J0 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC26.89■■□□□ 1.9
SH3RF1Q7Z6J0 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC26.89■■□□□ 1.9
SH3RF1Q7Z6J0 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC26.89■■□□□ 1.9
SH3RF1Q7Z6J0 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC26.88■■□□□ 1.89
SH3RF1Q7Z6J0 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC26.88■■□□□ 1.89
SH3RF1Q7Z6J0 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC26.88■■□□□ 1.89
Retrieved 100 of 98,524 protein–RNA pairs in 94.9 ms