Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC31.91■■■□□ 2.7
USP54Q70EL1 CLTA-206ENST00000466396 695 ntTSL 2 BASIC31.91■■■□□ 2.7
USP54Q70EL1 AL139246.5-201ENST00000606645 996 ntBASIC31.91■■■□□ 2.7
USP54Q70EL1 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC31.91■■■□□ 2.7
USP54Q70EL1 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC31.91■■■□□ 2.7
USP54Q70EL1 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
USP54Q70EL1 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC31.9■■■□□ 2.7
USP54Q70EL1 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC31.9■■■□□ 2.7
USP54Q70EL1 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC31.9■■■□□ 2.7
USP54Q70EL1 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC31.9■■■□□ 2.7
USP54Q70EL1 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC31.9■■■□□ 2.7
USP54Q70EL1 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC31.89■■■□□ 2.7
USP54Q70EL1 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC31.89■■■□□ 2.7
USP54Q70EL1 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC31.89■■■□□ 2.7
USP54Q70EL1 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC31.89■■■□□ 2.7
USP54Q70EL1 CLTA-210ENST00000540080 989 ntTSL 2 BASIC31.89■■■□□ 2.7
USP54Q70EL1 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC31.89■■■□□ 2.7
USP54Q70EL1 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC31.89■■■□□ 2.7
USP54Q70EL1 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC31.89■■■□□ 2.7
USP54Q70EL1 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC31.89■■■□□ 2.7
USP54Q70EL1 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC31.89■■■□□ 2.7
USP54Q70EL1 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC31.89■■■□□ 2.7
USP54Q70EL1 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC31.88■■■□□ 2.69
USP54Q70EL1 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC31.88■■■□□ 2.69
USP54Q70EL1 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC31.88■■■□□ 2.69
USP54Q70EL1 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC31.88■■■□□ 2.69
USP54Q70EL1 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
USP54Q70EL1 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
USP54Q70EL1 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC31.87■■■□□ 2.69
USP54Q70EL1 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC31.87■■■□□ 2.69
USP54Q70EL1 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC31.87■■■□□ 2.69
USP54Q70EL1 AC010501.1-201ENST00000606270 1962 ntBASIC31.86■■■□□ 2.69
USP54Q70EL1 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC31.86■■■□□ 2.69
USP54Q70EL1 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC31.86■■■□□ 2.69
USP54Q70EL1 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC31.86■■■□□ 2.69
USP54Q70EL1 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC31.86■■■□□ 2.69
USP54Q70EL1 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC31.86■■■□□ 2.69
USP54Q70EL1 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC31.86■■■□□ 2.69
USP54Q70EL1 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC31.85■■■□□ 2.69
USP54Q70EL1 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC31.85■■■□□ 2.69
USP54Q70EL1 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC31.84■■■□□ 2.69
USP54Q70EL1 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC31.84■■■□□ 2.69
USP54Q70EL1 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC31.84■■■□□ 2.69
USP54Q70EL1 AC090877.2-201ENST00000558441 1738 ntBASIC31.84■■■□□ 2.69
USP54Q70EL1 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC31.84■■■□□ 2.69
USP54Q70EL1 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
USP54Q70EL1 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
USP54Q70EL1 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC31.83■■■□□ 2.69
USP54Q70EL1 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
USP54Q70EL1 ERN1-208ENST00000606895 2068 ntBASIC31.83■■■□□ 2.69
USP54Q70EL1 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
USP54Q70EL1 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC31.83■■■□□ 2.69
USP54Q70EL1 SHF-206ENST00000560471 2499 ntTSL 5 BASIC31.83■■■□□ 2.69
USP54Q70EL1 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC31.82■■■□□ 2.69
USP54Q70EL1 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.68
USP54Q70EL1 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC31.82■■■□□ 2.68
USP54Q70EL1 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC31.82■■■□□ 2.68
USP54Q70EL1 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC31.82■■■□□ 2.68
USP54Q70EL1 AC097639.1-201ENST00000565519 1891 ntBASIC31.81■■■□□ 2.68
USP54Q70EL1 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
USP54Q70EL1 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC31.81■■■□□ 2.68
USP54Q70EL1 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC31.81■■■□□ 2.68
USP54Q70EL1 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
USP54Q70EL1 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
USP54Q70EL1 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC31.8■■■□□ 2.68
USP54Q70EL1 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC31.8■■■□□ 2.68
USP54Q70EL1 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
USP54Q70EL1 NALT1-201ENST00000429224 738 ntTSL 5 BASIC31.8■■■□□ 2.68
USP54Q70EL1 RALB-208ENST00000631312 311 ntTSL 5 BASIC31.8■■■□□ 2.68
USP54Q70EL1 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
USP54Q70EL1 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC31.8■■■□□ 2.68
USP54Q70EL1 AK3-203ENST00000447596 705 ntTSL 2 BASIC31.8■■■□□ 2.68
USP54Q70EL1 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC31.8■■■□□ 2.68
USP54Q70EL1 AL356740.2-201ENST00000601559 647 ntBASIC31.8■■■□□ 2.68
USP54Q70EL1 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC31.8■■■□□ 2.68
USP54Q70EL1 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC31.79■■■□□ 2.68
USP54Q70EL1 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC31.79■■■□□ 2.68
USP54Q70EL1 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC31.79■■■□□ 2.68
USP54Q70EL1 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC31.78■■■□□ 2.68
USP54Q70EL1 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC31.78■■■□□ 2.68
USP54Q70EL1 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC31.77■■■□□ 2.68
USP54Q70EL1 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC31.77■■■□□ 2.68
USP54Q70EL1 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC31.77■■■□□ 2.68
USP54Q70EL1 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC31.77■■■□□ 2.68
USP54Q70EL1 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC31.77■■■□□ 2.68
USP54Q70EL1 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC31.76■■■□□ 2.68
USP54Q70EL1 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC31.76■■■□□ 2.67
USP54Q70EL1 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC31.76■■■□□ 2.67
USP54Q70EL1 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
USP54Q70EL1 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC31.75■■■□□ 2.67
USP54Q70EL1 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
USP54Q70EL1 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
USP54Q70EL1 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC31.75■■■□□ 2.67
USP54Q70EL1 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC31.74■■■□□ 2.67
USP54Q70EL1 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC31.74■■■□□ 2.67
USP54Q70EL1 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.67
USP54Q70EL1 AC096631.2-201ENST00000436136 790 ntBASIC31.73■■■□□ 2.67
USP54Q70EL1 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC31.73■■■□□ 2.67
USP54Q70EL1 LBH-205ENST00000407930 756 ntTSL 2 BASIC31.73■■■□□ 2.67
USP54Q70EL1 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC31.73■■■□□ 2.67
Retrieved 100 of 98,524 protein–RNA pairs in 10.9 ms