Protein–RNA interactions for Protein: Q38SD2

LRRK1, Leucine-rich repeat serine/threonine-protein kinase 1, humanhuman

Predictions only

Length 2,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRK1Q38SD2 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
LRRK1Q38SD2 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC23.42■■□□□ 1.34
LRRK1Q38SD2 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
LRRK1Q38SD2 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC23.41■■□□□ 1.34
LRRK1Q38SD2 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC23.41■■□□□ 1.34
LRRK1Q38SD2 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC23.41■■□□□ 1.34
LRRK1Q38SD2 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC23.41■■□□□ 1.34
LRRK1Q38SD2 CREM-210ENST00000374721 2020 ntTSL 5 BASIC23.41■■□□□ 1.34
LRRK1Q38SD2 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
LRRK1Q38SD2 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
LRRK1Q38SD2 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
LRRK1Q38SD2 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
LRRK1Q38SD2 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
LRRK1Q38SD2 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC23.4■■□□□ 1.34
LRRK1Q38SD2 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC23.4■■□□□ 1.34
LRRK1Q38SD2 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC23.39■■□□□ 1.34
LRRK1Q38SD2 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC23.39■■□□□ 1.34
LRRK1Q38SD2 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC23.39■■□□□ 1.34
LRRK1Q38SD2 UNC93B8-201ENST00000511903 705 ntBASIC23.39■■□□□ 1.34
LRRK1Q38SD2 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC23.39■■□□□ 1.33
LRRK1Q38SD2 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC23.39■■□□□ 1.33
LRRK1Q38SD2 CREM-229ENST00000474362 1030 ntTSL 2 BASIC23.38■■□□□ 1.33
LRRK1Q38SD2 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC23.38■■□□□ 1.33
LRRK1Q38SD2 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC23.38■■□□□ 1.33
LRRK1Q38SD2 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
LRRK1Q38SD2 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
LRRK1Q38SD2 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC23.38■■□□□ 1.33
LRRK1Q38SD2 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
LRRK1Q38SD2 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC23.37■■□□□ 1.33
LRRK1Q38SD2 KRT16P3-201ENST00000439127 1283 ntBASIC23.37■■□□□ 1.33
LRRK1Q38SD2 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC23.37■■□□□ 1.33
LRRK1Q38SD2 GRAMD4P7-201ENST00000578182 1232 ntBASIC23.37■■□□□ 1.33
LRRK1Q38SD2 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC23.37■■□□□ 1.33
LRRK1Q38SD2 AC021242.3-201ENST00000607598 1377 ntBASIC23.37■■□□□ 1.33
LRRK1Q38SD2 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
LRRK1Q38SD2 SLC6A10P-202ENST00000431994 2058 ntBASIC23.37■■□□□ 1.33
LRRK1Q38SD2 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
LRRK1Q38SD2 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC23.37■■□□□ 1.33
LRRK1Q38SD2 KRT125P-201ENST00000546827 989 ntBASIC23.37■■□□□ 1.33
LRRK1Q38SD2 AC131212.1-201ENST00000613771 668 ntBASIC23.36■■□□□ 1.33
LRRK1Q38SD2 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC23.36■■□□□ 1.33
LRRK1Q38SD2 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
LRRK1Q38SD2 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC23.35■■□□□ 1.33
LRRK1Q38SD2 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC23.35■■□□□ 1.33
LRRK1Q38SD2 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
LRRK1Q38SD2 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC23.35■■□□□ 1.33
LRRK1Q38SD2 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC23.35■■□□□ 1.33
LRRK1Q38SD2 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
LRRK1Q38SD2 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC23.35■■□□□ 1.33
LRRK1Q38SD2 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
LRRK1Q38SD2 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC23.35■■□□□ 1.33
LRRK1Q38SD2 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC23.35■■□□□ 1.33
LRRK1Q38SD2 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
LRRK1Q38SD2 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC23.34■■□□□ 1.33
LRRK1Q38SD2 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC23.34■■□□□ 1.33
LRRK1Q38SD2 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC23.34■■□□□ 1.33
LRRK1Q38SD2 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
LRRK1Q38SD2 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
LRRK1Q38SD2 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC23.34■■□□□ 1.33
LRRK1Q38SD2 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
LRRK1Q38SD2 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC23.33■■□□□ 1.33
LRRK1Q38SD2 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC23.33■■□□□ 1.33
LRRK1Q38SD2 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
LRRK1Q38SD2 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC23.33■■□□□ 1.32
LRRK1Q38SD2 SSSCA1-AS1-201ENST00000567594 614 ntBASIC23.33■■□□□ 1.32
LRRK1Q38SD2 SNX5-217ENST00000606557 1087 ntBASIC23.33■■□□□ 1.32
LRRK1Q38SD2 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC23.33■■□□□ 1.32
LRRK1Q38SD2 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC23.32■■□□□ 1.32
LRRK1Q38SD2 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
LRRK1Q38SD2 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC23.32■■□□□ 1.32
LRRK1Q38SD2 GAK-223ENST00000628912 497 ntTSL 5 BASIC23.32■■□□□ 1.32
LRRK1Q38SD2 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
LRRK1Q38SD2 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC23.32■■□□□ 1.32
LRRK1Q38SD2 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC23.32■■□□□ 1.32
LRRK1Q38SD2 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
LRRK1Q38SD2 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC23.31■■□□□ 1.32
LRRK1Q38SD2 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC23.31■■□□□ 1.32
LRRK1Q38SD2 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC23.31■■□□□ 1.32
LRRK1Q38SD2 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC23.3■■□□□ 1.32
LRRK1Q38SD2 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC23.3■■□□□ 1.32
LRRK1Q38SD2 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC23.3■■□□□ 1.32
LRRK1Q38SD2 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC23.3■■□□□ 1.32
LRRK1Q38SD2 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
LRRK1Q38SD2 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
LRRK1Q38SD2 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
LRRK1Q38SD2 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
LRRK1Q38SD2 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC23.3■■□□□ 1.32
LRRK1Q38SD2 AC019069.1-201ENST00000610008 1333 ntBASIC23.3■■□□□ 1.32
LRRK1Q38SD2 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
LRRK1Q38SD2 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC23.29■■□□□ 1.32
LRRK1Q38SD2 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC23.29■■□□□ 1.32
LRRK1Q38SD2 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC23.29■■□□□ 1.32
LRRK1Q38SD2 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
LRRK1Q38SD2 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC23.29■■□□□ 1.32
LRRK1Q38SD2 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
LRRK1Q38SD2 AC090877.2-201ENST00000558441 1738 ntBASIC23.29■■□□□ 1.32
LRRK1Q38SD2 AC092028.1-203ENST00000608262 953 ntBASIC23.28■■□□□ 1.32
LRRK1Q38SD2 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
LRRK1Q38SD2 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC23.28■■□□□ 1.32
LRRK1Q38SD2 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC23.28■■□□□ 1.32
Retrieved 100 of 98,524 protein–RNA pairs in 15.7 ms