Protein–RNA interactions for Protein: P78367

NKX3-2, Homeobox protein Nkx-3.2, humanhuman

Predictions only

Length 333 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-2P78367 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC26.31■■□□□ 1.8
NKX3-2P78367 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
NKX3-2P78367 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
NKX3-2P78367 AC106739.1-201ENST00000617035 715 ntBASIC26.31■■□□□ 1.8
NKX3-2P78367 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC26.31■■□□□ 1.8
NKX3-2P78367 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC26.3■■□□□ 1.8
NKX3-2P78367 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
NKX3-2P78367 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
NKX3-2P78367 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
NKX3-2P78367 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC26.29■■□□□ 1.8
NKX3-2P78367 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC26.29■■□□□ 1.8
NKX3-2P78367 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
NKX3-2P78367 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC26.29■■□□□ 1.8
NKX3-2P78367 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC26.29■■□□□ 1.8
NKX3-2P78367 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
NKX3-2P78367 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
NKX3-2P78367 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC26.28■■□□□ 1.8
NKX3-2P78367 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
NKX3-2P78367 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC26.28■■□□□ 1.8
NKX3-2P78367 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
NKX3-2P78367 EBPL-204ENST00000378272 766 ntTSL 3 BASIC26.27■■□□□ 1.8
NKX3-2P78367 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC26.27■■□□□ 1.8
NKX3-2P78367 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
NKX3-2P78367 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
NKX3-2P78367 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
NKX3-2P78367 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC26.26■■□□□ 1.79
NKX3-2P78367 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
NKX3-2P78367 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC26.26■■□□□ 1.79
NKX3-2P78367 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC26.26■■□□□ 1.79
NKX3-2P78367 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
NKX3-2P78367 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC26.26■■□□□ 1.79
NKX3-2P78367 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC26.26■■□□□ 1.79
NKX3-2P78367 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
NKX3-2P78367 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC26.25■■□□□ 1.79
NKX3-2P78367 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC26.25■■□□□ 1.79
NKX3-2P78367 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
NKX3-2P78367 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
NKX3-2P78367 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC26.24■■□□□ 1.79
NKX3-2P78367 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC26.24■■□□□ 1.79
NKX3-2P78367 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
NKX3-2P78367 LBH-205ENST00000407930 756 ntTSL 2 BASIC26.24■■□□□ 1.79
NKX3-2P78367 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC26.24■■□□□ 1.79
NKX3-2P78367 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC26.24■■□□□ 1.79
NKX3-2P78367 AL031432.3-201ENST00000607698 485 ntBASIC26.23■■□□□ 1.79
NKX3-2P78367 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
NKX3-2P78367 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC26.22■■□□□ 1.79
NKX3-2P78367 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC26.22■■□□□ 1.79
NKX3-2P78367 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
NKX3-2P78367 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC26.22■■□□□ 1.79
NKX3-2P78367 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC26.22■■□□□ 1.79
NKX3-2P78367 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC26.22■■□□□ 1.79
NKX3-2P78367 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC26.21■■□□□ 1.79
NKX3-2P78367 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
NKX3-2P78367 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC26.21■■□□□ 1.79
NKX3-2P78367 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC26.21■■□□□ 1.79
NKX3-2P78367 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.79
NKX3-2P78367 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.79
NKX3-2P78367 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
NKX3-2P78367 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC26.2■■□□□ 1.78
NKX3-2P78367 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC26.2■■□□□ 1.78
NKX3-2P78367 PBX2P1-201ENST00000493219 1291 ntBASIC26.2■■□□□ 1.78
NKX3-2P78367 SUDS3P1-201ENST00000505831 966 ntBASIC26.2■■□□□ 1.78
NKX3-2P78367 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC26.2■■□□□ 1.78
NKX3-2P78367 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
NKX3-2P78367 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC26.2■■□□□ 1.78
NKX3-2P78367 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
NKX3-2P78367 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC26.19■■□□□ 1.78
NKX3-2P78367 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
NKX3-2P78367 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC26.19■■□□□ 1.78
NKX3-2P78367 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
NKX3-2P78367 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC26.18■■□□□ 1.78
NKX3-2P78367 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC26.18■■□□□ 1.78
NKX3-2P78367 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC26.18■■□□□ 1.78
NKX3-2P78367 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
NKX3-2P78367 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
NKX3-2P78367 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
NKX3-2P78367 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC26.17■■□□□ 1.78
NKX3-2P78367 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
NKX3-2P78367 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
NKX3-2P78367 ZNRF2P3-201ENST00000424200 374 ntBASIC26.17■■□□□ 1.78
NKX3-2P78367 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC26.17■■□□□ 1.78
NKX3-2P78367 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC26.17■■□□□ 1.78
NKX3-2P78367 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC26.17■■□□□ 1.78
NKX3-2P78367 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC26.17■■□□□ 1.78
NKX3-2P78367 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC26.17■■□□□ 1.78
NKX3-2P78367 UNC93B3-201ENST00000308076 687 ntBASIC26.16■■□□□ 1.78
NKX3-2P78367 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
NKX3-2P78367 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC26.16■■□□□ 1.78
NKX3-2P78367 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
NKX3-2P78367 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC26.15■■□□□ 1.78
NKX3-2P78367 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC26.15■■□□□ 1.78
NKX3-2P78367 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC26.15■■□□□ 1.78
NKX3-2P78367 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
NKX3-2P78367 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC26.15■■□□□ 1.78
NKX3-2P78367 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC26.15■■□□□ 1.78
NKX3-2P78367 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
NKX3-2P78367 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC26.14■■□□□ 1.78
NKX3-2P78367 GUK1-205ENST00000366722 850 ntTSL 3 BASIC26.14■■□□□ 1.78
NKX3-2P78367 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC26.14■■□□□ 1.78
NKX3-2P78367 AC097639.1-201ENST00000565519 1891 ntBASIC26.13■■□□□ 1.77
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms