Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
RNF4P78317 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
RNF4P78317 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC21.75■■□□□ 1.07
RNF4P78317 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC21.75■■□□□ 1.07
RNF4P78317 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
RNF4P78317 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC21.75■■□□□ 1.07
RNF4P78317 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
RNF4P78317 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC21.75■■□□□ 1.07
RNF4P78317 SHF-207ENST00000560540 2062 ntTSL 5 BASIC21.75■■□□□ 1.07
RNF4P78317 AC090877.2-201ENST00000558441 1738 ntBASIC21.75■■□□□ 1.07
RNF4P78317 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC21.74■■□□□ 1.07
RNF4P78317 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
RNF4P78317 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
RNF4P78317 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
RNF4P78317 GAK-223ENST00000628912 497 ntTSL 5 BASIC21.74■■□□□ 1.07
RNF4P78317 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC21.74■■□□□ 1.07
RNF4P78317 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC21.74■■□□□ 1.07
RNF4P78317 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC21.73■■□□□ 1.07
RNF4P78317 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC21.73■■□□□ 1.07
RNF4P78317 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
RNF4P78317 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC21.73■■□□□ 1.07
RNF4P78317 RNF146-205ENST00000477776 762 ntTSL 3 BASIC21.73■■□□□ 1.07
RNF4P78317 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
RNF4P78317 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
RNF4P78317 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
RNF4P78317 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC21.73■■□□□ 1.07
RNF4P78317 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
RNF4P78317 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
RNF4P78317 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
RNF4P78317 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC21.72■■□□□ 1.07
RNF4P78317 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC21.72■■□□□ 1.07
RNF4P78317 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC21.72■■□□□ 1.07
RNF4P78317 MIR4281-201ENST00000580852 62 ntBASIC21.72■■□□□ 1.07
RNF4P78317 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
RNF4P78317 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
RNF4P78317 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
RNF4P78317 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
RNF4P78317 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
RNF4P78317 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
RNF4P78317 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
RNF4P78317 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC21.71■■□□□ 1.07
RNF4P78317 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC21.71■■□□□ 1.07
RNF4P78317 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
RNF4P78317 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
RNF4P78317 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC21.7■■□□□ 1.07
RNF4P78317 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
RNF4P78317 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
RNF4P78317 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC21.7■■□□□ 1.06
RNF4P78317 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC21.7■■□□□ 1.06
RNF4P78317 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
RNF4P78317 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
RNF4P78317 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
RNF4P78317 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
RNF4P78317 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
RNF4P78317 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
RNF4P78317 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
RNF4P78317 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC21.69■■□□□ 1.06
RNF4P78317 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
RNF4P78317 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
RNF4P78317 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC21.68■■□□□ 1.06
RNF4P78317 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
RNF4P78317 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
RNF4P78317 TRIR-205ENST00000592273 783 ntTSL 3 BASIC21.68■■□□□ 1.06
RNF4P78317 AC137630.3-201ENST00000607245 391 ntBASIC21.68■■□□□ 1.06
RNF4P78317 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
RNF4P78317 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
RNF4P78317 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
RNF4P78317 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC21.68■■□□□ 1.06
RNF4P78317 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC21.68■■□□□ 1.06
RNF4P78317 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
RNF4P78317 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
RNF4P78317 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC21.68■■□□□ 1.06
RNF4P78317 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
RNF4P78317 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
RNF4P78317 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
RNF4P78317 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC21.67■■□□□ 1.06
RNF4P78317 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
RNF4P78317 BX664725.1-201ENST00000438252 379 ntBASIC21.67■■□□□ 1.06
RNF4P78317 Z92544.1-202ENST00000571933 1220 ntBASIC21.67■■□□□ 1.06
RNF4P78317 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
RNF4P78317 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC21.67■■□□□ 1.06
RNF4P78317 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
RNF4P78317 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
RNF4P78317 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
RNF4P78317 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC21.66■■□□□ 1.06
RNF4P78317 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
RNF4P78317 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
RNF4P78317 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC21.66■■□□□ 1.06
RNF4P78317 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC21.66■■□□□ 1.06
RNF4P78317 AC239859.2-201ENST00000444165 318 ntBASIC21.66■■□□□ 1.06
RNF4P78317 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC21.66■■□□□ 1.06
RNF4P78317 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC21.65■■□□□ 1.06
RNF4P78317 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
RNF4P78317 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
RNF4P78317 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC21.65■■□□□ 1.06
RNF4P78317 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
RNF4P78317 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
RNF4P78317 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
RNF4P78317 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC21.65■■□□□ 1.06
RNF4P78317 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC21.65■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 69.5 ms