Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CDX1P47902 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CDX1P47902 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
CDX1P47902 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CDX1P47902 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC18.91■□□□□ 0.62
CDX1P47902 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CDX1P47902 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.62
CDX1P47902 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CDX1P47902 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CDX1P47902 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
CDX1P47902 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CDX1P47902 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CDX1P47902 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC18.89■□□□□ 0.62
CDX1P47902 AC142472.1-201ENST00000612013 1741 ntBASIC18.89■□□□□ 0.61
CDX1P47902 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
CDX1P47902 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
CDX1P47902 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CDX1P47902 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
CDX1P47902 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
CDX1P47902 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
CDX1P47902 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CDX1P47902 GUK1-208ENST00000366728 842 ntTSL 2 BASIC18.88■□□□□ 0.61
CDX1P47902 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC18.88■□□□□ 0.61
CDX1P47902 DUX4L9-201ENST00000449051 1259 ntBASIC18.88■□□□□ 0.61
CDX1P47902 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CDX1P47902 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC18.88■□□□□ 0.61
CDX1P47902 AC018755.3-202ENST00000596210 929 ntBASIC18.88■□□□□ 0.61
CDX1P47902 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CDX1P47902 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CDX1P47902 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CDX1P47902 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CDX1P47902 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CDX1P47902 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC18.87■□□□□ 0.61
CDX1P47902 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC18.87■□□□□ 0.61
CDX1P47902 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CDX1P47902 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CDX1P47902 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CDX1P47902 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CDX1P47902 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC18.86■□□□□ 0.61
CDX1P47902 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC18.86■□□□□ 0.61
CDX1P47902 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
CDX1P47902 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
CDX1P47902 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
CDX1P47902 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC18.86■□□□□ 0.61
CDX1P47902 MIR6765-201ENST00000614092 87 ntBASIC18.86■□□□□ 0.61
CDX1P47902 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CDX1P47902 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CDX1P47902 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CDX1P47902 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
CDX1P47902 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC18.86■□□□□ 0.61
CDX1P47902 MED17-227ENST00000640521 2047 ntTSL 5 BASIC18.86■□□□□ 0.61
CDX1P47902 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
CDX1P47902 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC18.86■□□□□ 0.61
CDX1P47902 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
CDX1P47902 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC18.85■□□□□ 0.61
CDX1P47902 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC18.85■□□□□ 0.61
CDX1P47902 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CDX1P47902 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CDX1P47902 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CDX1P47902 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
CDX1P47902 DUX4L18-201ENST00000553347 1267 ntBASIC18.85■□□□□ 0.61
CDX1P47902 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
CDX1P47902 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CDX1P47902 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CDX1P47902 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
CDX1P47902 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CDX1P47902 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CDX1P47902 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC18.84■□□□□ 0.61
CDX1P47902 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC18.84■□□□□ 0.61
CDX1P47902 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC18.84■□□□□ 0.61
CDX1P47902 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC18.84■□□□□ 0.61
CDX1P47902 AP004609.3-201ENST00000610705 1884 ntBASIC18.84■□□□□ 0.61
CDX1P47902 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
CDX1P47902 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.61
CDX1P47902 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC18.83■□□□□ 0.61
CDX1P47902 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.6
CDX1P47902 SPCS2P3-201ENST00000500401 656 ntBASIC18.83■□□□□ 0.6
CDX1P47902 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
CDX1P47902 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
CDX1P47902 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC18.83■□□□□ 0.6
CDX1P47902 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CDX1P47902 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC18.83■□□□□ 0.6
CDX1P47902 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CDX1P47902 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
CDX1P47902 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CDX1P47902 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
CDX1P47902 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
CDX1P47902 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
CDX1P47902 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
CDX1P47902 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CDX1P47902 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
CDX1P47902 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC18.82■□□□□ 0.6
CDX1P47902 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CDX1P47902 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CDX1P47902 AC092803.2-201ENST00000564287 1899 ntBASIC18.82■□□□□ 0.6
CDX1P47902 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CDX1P47902 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CDX1P47902 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CDX1P47902 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC18.81■□□□□ 0.6
CDX1P47902 HYI-210ENST00000486909 905 ntTSL 5 BASIC18.81■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms