Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC24.52■■□□□ 1.52
PTPN9P43378 LSR-205ENST00000427250 1606 ntTSL 2 BASIC24.52■■□□□ 1.52
PTPN9P43378 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC24.52■■□□□ 1.52
PTPN9P43378 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC24.51■■□□□ 1.51
PTPN9P43378 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
PTPN9P43378 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC24.51■■□□□ 1.51
PTPN9P43378 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC24.51■■□□□ 1.51
PTPN9P43378 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC24.51■■□□□ 1.51
PTPN9P43378 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
PTPN9P43378 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
PTPN9P43378 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
PTPN9P43378 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC24.51■■□□□ 1.51
PTPN9P43378 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
PTPN9P43378 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC24.5■■□□□ 1.51
PTPN9P43378 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
PTPN9P43378 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC24.5■■□□□ 1.51
PTPN9P43378 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
PTPN9P43378 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
PTPN9P43378 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
PTPN9P43378 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC24.5■■□□□ 1.51
PTPN9P43378 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC24.5■■□□□ 1.51
PTPN9P43378 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
PTPN9P43378 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
PTPN9P43378 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC24.49■■□□□ 1.51
PTPN9P43378 SSSCA1-AS1-201ENST00000567594 614 ntBASIC24.49■■□□□ 1.51
PTPN9P43378 PVT1_1.1-201ENST00000615125 194 ntBASIC24.49■■□□□ 1.51
PTPN9P43378 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
PTPN9P43378 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC24.49■■□□□ 1.51
PTPN9P43378 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
PTPN9P43378 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
PTPN9P43378 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
PTPN9P43378 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC24.48■■□□□ 1.51
PTPN9P43378 AC022616.5-201ENST00000518796 181 ntBASIC24.48■■□□□ 1.51
PTPN9P43378 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC24.48■■□□□ 1.51
PTPN9P43378 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC24.48■■□□□ 1.51
PTPN9P43378 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC24.47■■□□□ 1.51
PTPN9P43378 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
PTPN9P43378 EED-207ENST00000528180 1745 ntTSL 5 BASIC24.47■■□□□ 1.51
PTPN9P43378 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
PTPN9P43378 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC24.47■■□□□ 1.51
PTPN9P43378 AC010980.1-201ENST00000587192 1142 ntBASIC24.47■■□□□ 1.51
PTPN9P43378 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC24.47■■□□□ 1.51
PTPN9P43378 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC24.47■■□□□ 1.51
PTPN9P43378 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
PTPN9P43378 BEX3-202ENST00000372634 753 ntTSL 2 BASIC24.46■■□□□ 1.51
PTPN9P43378 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
PTPN9P43378 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
PTPN9P43378 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC24.46■■□□□ 1.51
PTPN9P43378 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
PTPN9P43378 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
PTPN9P43378 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
PTPN9P43378 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC24.45■■□□□ 1.5
PTPN9P43378 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
PTPN9P43378 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC24.45■■□□□ 1.5
PTPN9P43378 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC24.45■■□□□ 1.5
PTPN9P43378 AL139125.2-201ENST00000623134 1869 ntBASIC24.45■■□□□ 1.5
PTPN9P43378 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC24.45■■□□□ 1.5
PTPN9P43378 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC24.45■■□□□ 1.5
PTPN9P43378 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC24.45■■□□□ 1.5
PTPN9P43378 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC24.44■■□□□ 1.5
PTPN9P43378 AC090877.2-201ENST00000558441 1738 ntBASIC24.44■■□□□ 1.5
PTPN9P43378 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC24.44■■□□□ 1.5
PTPN9P43378 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
PTPN9P43378 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC24.44■■□□□ 1.5
PTPN9P43378 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC24.44■■□□□ 1.5
PTPN9P43378 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC24.44■■□□□ 1.5
PTPN9P43378 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
PTPN9P43378 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
PTPN9P43378 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC24.43■■□□□ 1.5
PTPN9P43378 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
PTPN9P43378 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
PTPN9P43378 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC24.42■■□□□ 1.5
PTPN9P43378 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC24.42■■□□□ 1.5
PTPN9P43378 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC24.42■■□□□ 1.5
PTPN9P43378 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
PTPN9P43378 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC24.42■■□□□ 1.5
PTPN9P43378 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC24.42■■□□□ 1.5
PTPN9P43378 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC24.42■■□□□ 1.5
PTPN9P43378 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
PTPN9P43378 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
PTPN9P43378 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
PTPN9P43378 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC24.42■■□□□ 1.5
PTPN9P43378 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC24.42■■□□□ 1.5
PTPN9P43378 AC135731.1-201ENST00000569415 2548 ntBASIC24.41■■□□□ 1.5
PTPN9P43378 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
PTPN9P43378 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC24.41■■□□□ 1.5
PTPN9P43378 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC24.4■■□□□ 1.5
PTPN9P43378 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC24.4■■□□□ 1.5
PTPN9P43378 AC011551.1-201ENST00000614101 683 ntBASIC24.4■■□□□ 1.5
PTPN9P43378 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC24.4■■□□□ 1.5
PTPN9P43378 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
PTPN9P43378 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
PTPN9P43378 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC24.39■■□□□ 1.5
PTPN9P43378 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC24.39■■□□□ 1.5
PTPN9P43378 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC24.39■■□□□ 1.5
PTPN9P43378 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC24.39■■□□□ 1.5
PTPN9P43378 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC24.39■■□□□ 1.49
PTPN9P43378 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
PTPN9P43378 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC24.39■■□□□ 1.49
PTPN9P43378 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms