Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC26.94■■□□□ 1.9
HTTP42858 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC26.93■■□□□ 1.9
HTTP42858 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC26.93■■□□□ 1.9
HTTP42858 AC092437.1-201ENST00000624794 1048 ntBASIC26.93■■□□□ 1.9
HTTP42858 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC26.93■■□□□ 1.9
HTTP42858 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC26.93■■□□□ 1.9
HTTP42858 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC26.93■■□□□ 1.9
HTTP42858 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC26.93■■□□□ 1.9
HTTP42858 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC26.93■■□□□ 1.9
HTTP42858 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
HTTP42858 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
HTTP42858 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC26.92■■□□□ 1.9
HTTP42858 GRAMD4P4-201ENST00000613563 1115 ntBASIC26.92■■□□□ 1.9
HTTP42858 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC26.92■■□□□ 1.9
HTTP42858 IKBKGP1-201ENST00000612193 1073 ntBASIC26.92■■□□□ 1.9
HTTP42858 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC26.92■■□□□ 1.9
HTTP42858 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC26.91■■□□□ 1.9
HTTP42858 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC26.91■■□□□ 1.9
HTTP42858 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC26.91■■□□□ 1.9
HTTP42858 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
HTTP42858 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC26.91■■□□□ 1.9
HTTP42858 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
HTTP42858 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC26.91■■□□□ 1.9
HTTP42858 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC26.9■■□□□ 1.9
HTTP42858 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
HTTP42858 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC26.9■■□□□ 1.9
HTTP42858 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC26.9■■□□□ 1.9
HTTP42858 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC26.9■■□□□ 1.9
HTTP42858 SRD5A1P1-201ENST00000442297 786 ntBASIC26.9■■□□□ 1.9
HTTP42858 MAG-206ENST00000597035 542 ntTSL 4 BASIC26.9■■□□□ 1.9
HTTP42858 SF1-220ENST00000626028 704 ntTSL 2 BASIC26.9■■□□□ 1.9
HTTP42858 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
HTTP42858 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC26.89■■□□□ 1.9
HTTP42858 PROC-203ENST00000409048 1586 ntTSL 5 BASIC26.89■■□□□ 1.9
HTTP42858 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.9
HTTP42858 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC26.89■■□□□ 1.9
HTTP42858 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.9
HTTP42858 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC26.89■■□□□ 1.89
HTTP42858 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC26.89■■□□□ 1.89
HTTP42858 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.89
HTTP42858 RASA4CP-201ENST00000424092 1398 ntBASIC26.88■■□□□ 1.89
HTTP42858 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC26.88■■□□□ 1.89
HTTP42858 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC26.88■■□□□ 1.89
HTTP42858 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC26.88■■□□□ 1.89
HTTP42858 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC26.88■■□□□ 1.89
HTTP42858 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC26.88■■□□□ 1.89
HTTP42858 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
HTTP42858 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC26.87■■□□□ 1.89
HTTP42858 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC26.87■■□□□ 1.89
HTTP42858 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC26.87■■□□□ 1.89
HTTP42858 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC26.87■■□□□ 1.89
HTTP42858 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC26.86■■□□□ 1.89
HTTP42858 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC26.86■■□□□ 1.89
HTTP42858 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC26.86■■□□□ 1.89
HTTP42858 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC26.86■■□□□ 1.89
HTTP42858 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC26.85■■□□□ 1.89
HTTP42858 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC26.85■■□□□ 1.89
HTTP42858 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC26.85■■□□□ 1.89
HTTP42858 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC26.85■■□□□ 1.89
HTTP42858 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC26.85■■□□□ 1.89
HTTP42858 LINC01003-201ENST00000564834 1764 ntBASIC26.84■■□□□ 1.89
HTTP42858 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC26.84■■□□□ 1.89
HTTP42858 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
HTTP42858 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC26.84■■□□□ 1.89
HTTP42858 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC26.84■■□□□ 1.89
HTTP42858 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC26.83■■□□□ 1.89
HTTP42858 AC022517.1-201ENST00000592429 346 ntBASIC26.83■■□□□ 1.89
HTTP42858 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC26.83■■□□□ 1.88
HTTP42858 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC26.82■■□□□ 1.88
HTTP42858 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC26.82■■□□□ 1.88
HTTP42858 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC26.82■■□□□ 1.88
HTTP42858 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC26.82■■□□□ 1.88
HTTP42858 MIR4767-201ENST00000582827 78 ntBASIC26.81■■□□□ 1.88
HTTP42858 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC26.81■■□□□ 1.88
HTTP42858 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC26.81■■□□□ 1.88
HTTP42858 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC26.81■■□□□ 1.88
HTTP42858 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
HTTP42858 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC26.81■■□□□ 1.88
HTTP42858 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC26.81■■□□□ 1.88
HTTP42858 AC027682.1-201ENST00000562846 899 ntBASIC26.81■■□□□ 1.88
HTTP42858 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC26.8■■□□□ 1.88
HTTP42858 RHOF-204ENST00000537265 699 ntTSL 2 BASIC26.8■■□□□ 1.88
HTTP42858 ID1-201ENST00000376105 1233 ntBASIC26.8■■□□□ 1.88
HTTP42858 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC26.8■■□□□ 1.88
HTTP42858 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC26.79■■□□□ 1.88
HTTP42858 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
HTTP42858 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC26.78■■□□□ 1.88
HTTP42858 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC26.78■■□□□ 1.88
HTTP42858 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC26.78■■□□□ 1.88
HTTP42858 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC26.77■■□□□ 1.88
HTTP42858 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC26.77■■□□□ 1.88
HTTP42858 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC26.77■■□□□ 1.88
HTTP42858 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC26.77■■□□□ 1.88
HTTP42858 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC26.77■■□□□ 1.88
HTTP42858 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
HTTP42858 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC26.77■■□□□ 1.88
HTTP42858 HACD1-201ENST00000326961 773 ntTSL 2 BASIC26.76■■□□□ 1.88
HTTP42858 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
HTTP42858 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
HTTP42858 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC26.76■■□□□ 1.87
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms