Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
COL8A1P27658 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
COL8A1P27658 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
COL8A1P27658 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
COL8A1P27658 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
COL8A1P27658 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
COL8A1P27658 MAG-206ENST00000597035 542 ntTSL 4 BASIC20.63■□□□□ 0.89
COL8A1P27658 AF131216.4-201ENST00000638924 1588 ntBASIC20.63■□□□□ 0.89
COL8A1P27658 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC20.62■□□□□ 0.89
COL8A1P27658 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC20.62■□□□□ 0.89
COL8A1P27658 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC20.62■□□□□ 0.89
COL8A1P27658 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC20.62■□□□□ 0.89
COL8A1P27658 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC20.62■□□□□ 0.89
COL8A1P27658 AC011551.1-201ENST00000614101 683 ntBASIC20.62■□□□□ 0.89
COL8A1P27658 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
COL8A1P27658 AC091305.1-201ENST00000479476 895 ntBASIC20.61■□□□□ 0.89
COL8A1P27658 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC20.61■□□□□ 0.89
COL8A1P27658 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
COL8A1P27658 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
COL8A1P27658 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL8A1P27658 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
COL8A1P27658 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL8A1P27658 SHF-206ENST00000560471 2499 ntTSL 5 BASIC20.6■□□□□ 0.89
COL8A1P27658 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL8A1P27658 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL8A1P27658 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL8A1P27658 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL8A1P27658 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC20.59■□□□□ 0.89
COL8A1P27658 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC20.59■□□□□ 0.89
COL8A1P27658 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC20.59■□□□□ 0.89
COL8A1P27658 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC20.58■□□□□ 0.89
COL8A1P27658 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
COL8A1P27658 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC20.58■□□□□ 0.89
COL8A1P27658 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
COL8A1P27658 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
COL8A1P27658 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
COL8A1P27658 CA15P2-201ENST00000611168 834 ntBASIC20.58■□□□□ 0.89
COL8A1P27658 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC20.58■□□□□ 0.88
COL8A1P27658 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL8A1P27658 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL8A1P27658 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL8A1P27658 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL8A1P27658 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC20.57■□□□□ 0.88
COL8A1P27658 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC20.57■□□□□ 0.88
COL8A1P27658 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL8A1P27658 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
COL8A1P27658 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
COL8A1P27658 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
COL8A1P27658 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
COL8A1P27658 DENND3-207ENST00000518347 850 ntTSL 2 BASIC20.56■□□□□ 0.88
COL8A1P27658 AC022517.1-201ENST00000592429 346 ntBASIC20.56■□□□□ 0.88
COL8A1P27658 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC20.56■□□□□ 0.88
COL8A1P27658 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
COL8A1P27658 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
COL8A1P27658 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
COL8A1P27658 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
COL8A1P27658 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL8A1P27658 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
COL8A1P27658 AC004448.1-201ENST00000458332 883 ntBASIC20.55■□□□□ 0.88
COL8A1P27658 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC20.55■□□□□ 0.88
COL8A1P27658 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
COL8A1P27658 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC20.55■□□□□ 0.88
COL8A1P27658 AL449106.1-201ENST00000608517 1980 ntBASIC20.54■□□□□ 0.88
COL8A1P27658 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL8A1P27658 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL8A1P27658 JTB-203ENST00000368589 1216 ntTSL 2 BASIC20.54■□□□□ 0.88
COL8A1P27658 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL8A1P27658 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC20.54■□□□□ 0.88
COL8A1P27658 MIR4767-201ENST00000582827 78 ntBASIC20.54■□□□□ 0.88
COL8A1P27658 AL137784.2-201ENST00000607332 1000 ntBASIC20.54■□□□□ 0.88
COL8A1P27658 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL8A1P27658 GATM-206ENST00000558336 1522 ntTSL 2 BASIC20.53■□□□□ 0.88
COL8A1P27658 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL8A1P27658 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC20.53■□□□□ 0.88
COL8A1P27658 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC20.53■□□□□ 0.88
COL8A1P27658 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL8A1P27658 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
COL8A1P27658 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL8A1P27658 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL8A1P27658 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
COL8A1P27658 IRS3P-201ENST00000223076 1006 ntBASIC20.52■□□□□ 0.88
COL8A1P27658 SNX5-217ENST00000606557 1087 ntBASIC20.52■□□□□ 0.88
COL8A1P27658 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
COL8A1P27658 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC20.52■□□□□ 0.87
COL8A1P27658 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL8A1P27658 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
COL8A1P27658 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC20.51■□□□□ 0.87
COL8A1P27658 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC20.51■□□□□ 0.87
COL8A1P27658 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
COL8A1P27658 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC20.51■□□□□ 0.87
COL8A1P27658 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL8A1P27658 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC20.51■□□□□ 0.87
COL8A1P27658 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC20.51■□□□□ 0.87
COL8A1P27658 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
COL8A1P27658 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
COL8A1P27658 RASA4CP-201ENST00000424092 1398 ntBASIC20.5■□□□□ 0.87
COL8A1P27658 ASB1-202ENST00000409297 878 ntTSL 5 BASIC20.5■□□□□ 0.87
COL8A1P27658 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
COL8A1P27658 MIR6722-201ENST00000617286 78 ntBASIC20.5■□□□□ 0.87
COL8A1P27658 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 15.7 ms