Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 AC090877.2-201ENST00000558441 1738 ntBASIC25.38■■□□□ 1.65
SMIM28A0A1B0GU29 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC25.38■■□□□ 1.65
SMIM28A0A1B0GU29 AL356441.2-201ENST00000443009 864 ntBASIC25.38■■□□□ 1.65
SMIM28A0A1B0GU29 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC25.38■■□□□ 1.65
SMIM28A0A1B0GU29 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
SMIM28A0A1B0GU29 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
SMIM28A0A1B0GU29 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
SMIM28A0A1B0GU29 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC25.37■■□□□ 1.65
SMIM28A0A1B0GU29 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC25.37■■□□□ 1.65
SMIM28A0A1B0GU29 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC25.37■■□□□ 1.65
SMIM28A0A1B0GU29 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
SMIM28A0A1B0GU29 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC25.37■■□□□ 1.65
SMIM28A0A1B0GU29 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC25.37■■□□□ 1.65
SMIM28A0A1B0GU29 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC25.37■■□□□ 1.65
SMIM28A0A1B0GU29 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
SMIM28A0A1B0GU29 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
SMIM28A0A1B0GU29 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
SMIM28A0A1B0GU29 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC25.36■■□□□ 1.65
SMIM28A0A1B0GU29 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC25.36■■□□□ 1.65
SMIM28A0A1B0GU29 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
SMIM28A0A1B0GU29 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
SMIM28A0A1B0GU29 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC25.35■■□□□ 1.65
SMIM28A0A1B0GU29 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC25.35■■□□□ 1.65
SMIM28A0A1B0GU29 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC25.35■■□□□ 1.65
SMIM28A0A1B0GU29 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC25.35■■□□□ 1.65
SMIM28A0A1B0GU29 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
SMIM28A0A1B0GU29 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC25.34■■□□□ 1.65
SMIM28A0A1B0GU29 UNC93B8-201ENST00000511903 705 ntBASIC25.34■■□□□ 1.65
SMIM28A0A1B0GU29 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
SMIM28A0A1B0GU29 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
SMIM28A0A1B0GU29 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC25.33■■□□□ 1.65
SMIM28A0A1B0GU29 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
SMIM28A0A1B0GU29 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC25.33■■□□□ 1.65
SMIM28A0A1B0GU29 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC25.33■■□□□ 1.65
SMIM28A0A1B0GU29 AC092028.1-203ENST00000608262 953 ntBASIC25.33■■□□□ 1.65
SMIM28A0A1B0GU29 AF131216.4-201ENST00000638924 1588 ntBASIC25.33■■□□□ 1.65
SMIM28A0A1B0GU29 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
SMIM28A0A1B0GU29 SLC6A10P-202ENST00000431994 2058 ntBASIC25.33■■□□□ 1.65
SMIM28A0A1B0GU29 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC25.33■■□□□ 1.64
SMIM28A0A1B0GU29 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC25.32■■□□□ 1.64
SMIM28A0A1B0GU29 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC25.32■■□□□ 1.64
SMIM28A0A1B0GU29 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC25.32■■□□□ 1.64
SMIM28A0A1B0GU29 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC25.32■■□□□ 1.64
SMIM28A0A1B0GU29 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
SMIM28A0A1B0GU29 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC25.31■■□□□ 1.64
SMIM28A0A1B0GU29 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC25.31■■□□□ 1.64
SMIM28A0A1B0GU29 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC25.31■■□□□ 1.64
SMIM28A0A1B0GU29 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC25.31■■□□□ 1.64
SMIM28A0A1B0GU29 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC25.31■■□□□ 1.64
SMIM28A0A1B0GU29 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC25.31■■□□□ 1.64
SMIM28A0A1B0GU29 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
SMIM28A0A1B0GU29 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
SMIM28A0A1B0GU29 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC25.3■■□□□ 1.64
SMIM28A0A1B0GU29 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC25.3■■□□□ 1.64
SMIM28A0A1B0GU29 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC25.3■■□□□ 1.64
SMIM28A0A1B0GU29 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
SMIM28A0A1B0GU29 SENP5-202ENST00000419026 973 ntTSL 3 BASIC25.3■■□□□ 1.64
SMIM28A0A1B0GU29 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC25.3■■□□□ 1.64
SMIM28A0A1B0GU29 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC25.3■■□□□ 1.64
SMIM28A0A1B0GU29 AC131212.1-201ENST00000613771 668 ntBASIC25.3■■□□□ 1.64
SMIM28A0A1B0GU29 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
SMIM28A0A1B0GU29 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC25.29■■□□□ 1.64
SMIM28A0A1B0GU29 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC25.29■■□□□ 1.64
SMIM28A0A1B0GU29 GRAMD4P7-201ENST00000578182 1232 ntBASIC25.29■■□□□ 1.64
SMIM28A0A1B0GU29 CEBPA-AS1-201ENST00000592982 2198 ntBASIC25.28■■□□□ 1.64
SMIM28A0A1B0GU29 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
SMIM28A0A1B0GU29 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
SMIM28A0A1B0GU29 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC25.28■■□□□ 1.64
SMIM28A0A1B0GU29 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC25.28■■□□□ 1.64
SMIM28A0A1B0GU29 TSPY9P-201ENST00000440215 945 ntBASIC25.28■■□□□ 1.64
SMIM28A0A1B0GU29 TSPY11P-201ENST00000442607 1045 ntBASIC25.28■■□□□ 1.64
SMIM28A0A1B0GU29 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC25.28■■□□□ 1.64
SMIM28A0A1B0GU29 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
SMIM28A0A1B0GU29 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC25.27■■□□□ 1.64
SMIM28A0A1B0GU29 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC25.27■■□□□ 1.64
SMIM28A0A1B0GU29 TK2-202ENST00000417693 1046 ntTSL 2 BASIC25.27■■□□□ 1.64
SMIM28A0A1B0GU29 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC25.27■■□□□ 1.64
SMIM28A0A1B0GU29 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
SMIM28A0A1B0GU29 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
SMIM28A0A1B0GU29 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC25.26■■□□□ 1.63
SMIM28A0A1B0GU29 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC25.26■■□□□ 1.63
SMIM28A0A1B0GU29 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC25.26■■□□□ 1.63
SMIM28A0A1B0GU29 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC25.26■■□□□ 1.63
SMIM28A0A1B0GU29 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
SMIM28A0A1B0GU29 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC25.26■■□□□ 1.63
SMIM28A0A1B0GU29 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
SMIM28A0A1B0GU29 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC25.26■■□□□ 1.63
SMIM28A0A1B0GU29 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
SMIM28A0A1B0GU29 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC25.25■■□□□ 1.63
SMIM28A0A1B0GU29 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC25.25■■□□□ 1.63
SMIM28A0A1B0GU29 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC25.25■■□□□ 1.63
SMIM28A0A1B0GU29 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC25.25■■□□□ 1.63
SMIM28A0A1B0GU29 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
SMIM28A0A1B0GU29 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC25.25■■□□□ 1.63
SMIM28A0A1B0GU29 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC25.25■■□□□ 1.63
SMIM28A0A1B0GU29 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
SMIM28A0A1B0GU29 KRT16P3-201ENST00000439127 1283 ntBASIC25.24■■□□□ 1.63
SMIM28A0A1B0GU29 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC25.24■■□□□ 1.63
SMIM28A0A1B0GU29 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC25.24■■□□□ 1.63
SMIM28A0A1B0GU29 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
Retrieved 100 of 98,524 protein–RNA pairs in 44.8 ms