Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC27.16■■□□□ 1.94
PTCHD1Q96NR3 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
PTCHD1Q96NR3 AC145285.7-201ENST00000614819 1539 ntBASIC27.15■■□□□ 1.94
PTCHD1Q96NR3 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
PTCHD1Q96NR3 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC27.11■■□□□ 1.93
PTCHD1Q96NR3 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC27.1■■□□□ 1.93
PTCHD1Q96NR3 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC27.1■■□□□ 1.93
PTCHD1Q96NR3 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC27.1■■□□□ 1.93
PTCHD1Q96NR3 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC27.1■■□□□ 1.93
PTCHD1Q96NR3 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC27.08■■□□□ 1.93
PTCHD1Q96NR3 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC27.08■■□□□ 1.93
PTCHD1Q96NR3 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC27.08■■□□□ 1.93
PTCHD1Q96NR3 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
PTCHD1Q96NR3 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC27.03■■□□□ 1.92
PTCHD1Q96NR3 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC27.03■■□□□ 1.92
PTCHD1Q96NR3 DYNLL1-208ENST00000550178 581 ntBASIC27.03■■□□□ 1.92
PTCHD1Q96NR3 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC27■■□□□ 1.91
PTCHD1Q96NR3 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC27■■□□□ 1.91
PTCHD1Q96NR3 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC27■■□□□ 1.91
PTCHD1Q96NR3 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC26.99■■□□□ 1.91
PTCHD1Q96NR3 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC26.98■■□□□ 1.91
PTCHD1Q96NR3 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC26.97■■□□□ 1.91
PTCHD1Q96NR3 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC26.97■■□□□ 1.91
PTCHD1Q96NR3 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC26.97■■□□□ 1.91
PTCHD1Q96NR3 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC26.96■■□□□ 1.91
PTCHD1Q96NR3 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC26.96■■□□□ 1.91
PTCHD1Q96NR3 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
PTCHD1Q96NR3 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC26.94■■□□□ 1.9
PTCHD1Q96NR3 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
PTCHD1Q96NR3 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
PTCHD1Q96NR3 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC26.9■■□□□ 1.9
PTCHD1Q96NR3 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC26.89■■□□□ 1.9
PTCHD1Q96NR3 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC26.88■■□□□ 1.89
PTCHD1Q96NR3 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
PTCHD1Q96NR3 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC26.85■■□□□ 1.89
PTCHD1Q96NR3 AL031258.1-201ENST00000623562 325 ntBASIC26.83■■□□□ 1.89
PTCHD1Q96NR3 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC26.81■■□□□ 1.88
PTCHD1Q96NR3 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC26.81■■□□□ 1.88
PTCHD1Q96NR3 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC26.8■■□□□ 1.88
PTCHD1Q96NR3 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC26.78■■□□□ 1.88
PTCHD1Q96NR3 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
PTCHD1Q96NR3 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
PTCHD1Q96NR3 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC26.74■■□□□ 1.87
PTCHD1Q96NR3 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC26.74■■□□□ 1.87
PTCHD1Q96NR3 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
PTCHD1Q96NR3 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC26.72■■□□□ 1.87
PTCHD1Q96NR3 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
PTCHD1Q96NR3 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC26.71■■□□□ 1.87
PTCHD1Q96NR3 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
PTCHD1Q96NR3 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC26.64■■□□□ 1.86
PTCHD1Q96NR3 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
PTCHD1Q96NR3 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC26.62■■□□□ 1.85
PTCHD1Q96NR3 EBPL-203ENST00000378270 579 ntTSL 2 BASIC26.6■■□□□ 1.85
PTCHD1Q96NR3 MVK-208ENST00000539696 608 ntTSL 5 BASIC26.57■■□□□ 1.84
PTCHD1Q96NR3 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC26.57■■□□□ 1.84
PTCHD1Q96NR3 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC26.57■■□□□ 1.84
PTCHD1Q96NR3 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
PTCHD1Q96NR3 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC26.55■■□□□ 1.84
PTCHD1Q96NR3 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC26.54■■□□□ 1.84
PTCHD1Q96NR3 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC26.54■■□□□ 1.84
PTCHD1Q96NR3 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC26.54■■□□□ 1.84
PTCHD1Q96NR3 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
PTCHD1Q96NR3 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
PTCHD1Q96NR3 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
PTCHD1Q96NR3 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
PTCHD1Q96NR3 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC26.5■■□□□ 1.83
PTCHD1Q96NR3 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
PTCHD1Q96NR3 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC26.49■■□□□ 1.83
PTCHD1Q96NR3 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
PTCHD1Q96NR3 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
PTCHD1Q96NR3 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
PTCHD1Q96NR3 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC26.42■■□□□ 1.82
PTCHD1Q96NR3 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC26.41■■□□□ 1.82
PTCHD1Q96NR3 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC26.4■■□□□ 1.82
PTCHD1Q96NR3 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC26.39■■□□□ 1.82
PTCHD1Q96NR3 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
PTCHD1Q96NR3 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC26.38■■□□□ 1.81
PTCHD1Q96NR3 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
PTCHD1Q96NR3 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
PTCHD1Q96NR3 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
PTCHD1Q96NR3 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
PTCHD1Q96NR3 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC26.34■■□□□ 1.81
PTCHD1Q96NR3 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
PTCHD1Q96NR3 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
PTCHD1Q96NR3 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC26.32■■□□□ 1.8
PTCHD1Q96NR3 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC26.3■■□□□ 1.8
PTCHD1Q96NR3 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC26.29■■□□□ 1.8
PTCHD1Q96NR3 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
PTCHD1Q96NR3 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
PTCHD1Q96NR3 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC26.28■■□□□ 1.8
PTCHD1Q96NR3 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC26.27■■□□□ 1.8
PTCHD1Q96NR3 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC26.27■■□□□ 1.8
PTCHD1Q96NR3 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
PTCHD1Q96NR3 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
PTCHD1Q96NR3 TUBB6-201ENST00000317702 2064 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
PTCHD1Q96NR3 RARRES2P7-201ENST00000567349 469 ntBASIC26.23■■□□□ 1.79
PTCHD1Q96NR3 KLF16-203ENST00000592313 508 ntTSL 3 BASIC26.23■■□□□ 1.79
PTCHD1Q96NR3 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
PTCHD1Q96NR3 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC26.21■■□□□ 1.79
PTCHD1Q96NR3 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC26.19■■□□□ 1.78
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms