Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 AMT-207ENST00000461210 850 ntTSL 210.81□□□□□ -0.685e-9■■■■■ 55.3
DDX55Q8NHQ9 AMT-209ENST00000465925 3976 ntTSL 59.7□□□□□ -0.865e-9■■■■■ 55.3
DDX55Q8NHQ9 RALGAPB-202ENST00000397040 8435 ntAPPRIS P3 TSL 1 (best) BASIC5.71□□□□□ -1.55e-9■■■■■ 55.3
DDX55Q8NHQ9 ARPC5-204ENST00000462965 2455 ntTSL 24.65□□□□□ -1.675e-9■■■■■ 55.3
DDX55Q8NHQ9 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC20.86■□□□□ 0.939e-13■■■■■ 54.6
DDX55Q8NHQ9 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.879e-13■■■■■ 54.6
DDX55Q8NHQ9 KANSL1-208ENST00000574590 5147 ntAPPRIS ALT1 TSL 2 BASIC13.35□□□□□ -0.279e-13■■■■■ 54.6
DDX55Q8NHQ9 KANSL1-215ENST00000576870 2848 ntTSL 213.27□□□□□ -0.299e-13■■■■■ 54.6
DDX55Q8NHQ9 KANSL1-201ENST00000262419 5309 ntAPPRIS P3 TSL 1 (best) BASIC12.38□□□□□ -0.439e-13■■■■■ 54.6
DDX55Q8NHQ9 KANSL1-211ENST00000575318 4935 ntTSL 5 BASIC12.25□□□□□ -0.459e-13■■■■■ 54.6
DDX55Q8NHQ9 KANSL1-204ENST00000572218 9095 ntTSL 1 (best)10.12□□□□□ -0.799e-13■■■■■ 54.6
DDX55Q8NHQ9 KANSL1-205ENST00000572904 4973 ntAPPRIS P3 TSL 5 BASIC10.06□□□□□ -0.89e-13■■■■■ 54.6
DDX55Q8NHQ9 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.233e-8■■■■■ 52
DDX55Q8NHQ9 ATP6V1B2-204ENST00000521442 738 ntTSL 310.02□□□□□ -0.813e-8■■■■■ 52
DDX55Q8NHQ9 ATP6V1B2-206ENST00000523482 6907 ntTSL 26.34□□□□□ -1.43e-8■■■■■ 52
DDX55Q8NHQ9 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.616e-7■■■■■ 51.7
DDX55Q8NHQ9 CXADR-205ENST00000400169 1445 ntAPPRIS ALT2 TSL 5 BASIC5.61□□□□□ -1.516e-7■■■■■ 51.7
DDX55Q8NHQ9 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC30.41■■■□□ 2.461e-8■■■■■ 51.1
DDX55Q8NHQ9 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC27.39■■□□□ 1.971e-8■■■■■ 51.1
DDX55Q8NHQ9 TMEM55B-203ENST00000553460 811 ntTSL 520.19■□□□□ 0.821e-8■■■■■ 51.1
DDX55Q8NHQ9 TMEM55B-207ENST00000557041 3453 ntTSL 216.16■□□□□ 0.181e-8■■■■■ 51.1
DDX55Q8NHQ9 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC33.27■■■□□ 2.922e-8■■■■■ 51
DDX55Q8NHQ9 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC32.78■■■□□ 2.842e-8■■■■■ 51
DDX55Q8NHQ9 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.182e-8■■■■■ 51
DDX55Q8NHQ9 GIPC1-204ENST00000585606 2071 ntTSL 221.2■□□□□ 0.982e-8■■■■■ 51
DDX55Q8NHQ9 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.474e-15■■■■■ 51
DDX55Q8NHQ9 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC16.49■□□□□ 0.234e-15■■■■■ 51
DDX55Q8NHQ9 VGLL4-201ENST00000273038 3725 ntTSL 1 (best) BASIC12.36□□□□□ -0.432e-8■■■■■ 51
DDX55Q8NHQ9 SMARCD1-206ENST00000549274 611 ntTSL 311.49□□□□□ -0.572e-8■■■■■ 51
DDX55Q8NHQ9 AC073869.1-202ENST00000438378 3785 ntTSL 1 (best) BASIC11.33□□□□□ -0.62e-8■■■■■ 51
DDX55Q8NHQ9 SMARCD1-205ENST00000548573 2095 ntTSL 5 BASIC10.21□□□□□ -0.772e-8■■■■■ 51
DDX55Q8NHQ9 UBR5-202ENST00000517465 1095 ntTSL 25.16□□□□□ -1.584e-15■■■■■ 51
DDX55Q8NHQ9 SLIRP-208ENST00000556956 450 ntTSL 23.02□□□□□ -1.932e-8■■■■■ 51
DDX55Q8NHQ9 PTMS-202ENST00000389462 773 ntTSL 2 BASIC20.33■□□□□ 0.852e-14■■■■■ 50.7
DDX55Q8NHQ9 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.993e-8■■■■■ 48.9
DDX55Q8NHQ9 MTMR12-202ENST00000280285 4966 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.453e-8■■■■■ 48.9
DDX55Q8NHQ9 GPX2-205ENST00000612794 1084 ntAPPRIS ALT1 TSL 5 BASIC12.72□□□□□ -0.379e-11■■■■■ 48.8
DDX55Q8NHQ9 GPX2-202ENST00000553522 1134 ntTSL 1 (best)12.55□□□□□ -0.49e-11■■■■■ 48.8
DDX55Q8NHQ9 GPX2-201ENST00000389614 990 ntAPPRIS P2 TSL 1 (best) BASIC9.73□□□□□ -0.859e-11■■■■■ 48.8
DDX55Q8NHQ9 RBM5-212ENST00000464087 5616 ntTSL 29.12□□□□□ -0.952e-9■■■■■ 48.7
DDX55Q8NHQ9 RBM5-201ENST00000347869 3188 ntAPPRIS P1 TSL 1 (best) BASIC9.05□□□□□ -0.962e-9■■■■■ 48.7
DDX55Q8NHQ9 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC20.47■□□□□ 0.878e-11■■■■■ 48.6
DDX55Q8NHQ9 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.288e-11■■■■■ 48.6
DDX55Q8NHQ9 FKBP9-214ENST00000538336 3621 ntTSL 2 BASIC15.81■□□□□ 0.128e-11■■■■■ 48.6
DDX55Q8NHQ9 PFKFB3-203ENST00000379775 4483 ntTSL 1 (best) BASIC13.41□□□□□ -0.268e-11■■■■■ 48.6
DDX55Q8NHQ9 PFKFB3-205ENST00000379789 4157 ntTSL 1 (best) BASIC12.13□□□□□ -0.478e-11■■■■■ 48.6
DDX55Q8NHQ9 FKBP9-212ENST00000490776 2699 ntTSL 2 BASIC11.28□□□□□ -0.68e-11■■■■■ 48.6
DDX55Q8NHQ9 SH3BP5L-203ENST00000484202 3110 ntTSL 217.06■□□□□ 0.322e-10■■■■■ 48.2
DDX55Q8NHQ9 ADGB-210ENST00000522242 607 ntTSL 415.77■□□□□ 0.125e-7■■■■■ 48.1
DDX55Q8NHQ9 ADGB-205ENST00000397944 5325 ntAPPRIS P5 TSL 5 BASIC7.04□□□□□ -1.285e-7■■■■■ 48.1
DDX55Q8NHQ9 ADGB-202ENST00000326929 2328 ntTSL 26.25□□□□□ -1.415e-7■■■■■ 48.1
DDX55Q8NHQ9 ADGB-211ENST00000522396 571 ntTSL 45.4□□□□□ -1.545e-7■■■■■ 48.1
DDX55Q8NHQ9 ADGB-209ENST00000493950 6779 ntTSL 1 (best)4.63□□□□□ -1.675e-7■■■■■ 48.1
DDX55Q8NHQ9 PRDX2-204ENST00000477555 699 ntTSL 213.57□□□□□ -0.245e-9■■■■■ 47.7
DDX55Q8NHQ9 PRDX2-205ENST00000478908 413 ntTSL 213.22□□□□□ -0.295e-9■■■■■ 47.7
DDX55Q8NHQ9 PRDX2-206ENST00000498785 505 ntTSL 212.83□□□□□ -0.365e-9■■■■■ 47.7
DDX55Q8NHQ9 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC24.35■■□□□ 1.491e-7■■■■■ 46.8
DDX55Q8NHQ9 FDXR-218ENST00000583881 1561 ntTSL 224.25■■□□□ 1.471e-7■■■■■ 46.8
DDX55Q8NHQ9 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC23.67■■□□□ 1.381e-7■■■■■ 46.8
DDX55Q8NHQ9 FDXR-206ENST00000577509 1912 ntTSL 223.31■■□□□ 1.321e-7■■■■■ 46.8
DDX55Q8NHQ9 FDXR-209ENST00000579482 2157 ntTSL 221.92■■□□□ 1.11e-7■■■■■ 46.8
DDX55Q8NHQ9 FDXR-208ENST00000578473 2482 ntTSL 1 (best)21.88■■□□□ 1.091e-7■■■■■ 46.8
DDX55Q8NHQ9 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC21.85■■□□□ 1.091e-7■■■■■ 46.8
DDX55Q8NHQ9 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC21.63■■□□□ 1.051e-7■■■■■ 46.8
DDX55Q8NHQ9 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 11e-7■■■■■ 46.8
DDX55Q8NHQ9 TMEM177-206ENST00000496203 881 ntTSL 1 (best)21.15■□□□□ 0.981e-7■■■■■ 46.8
DDX55Q8NHQ9 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.971e-7■■■■■ 46.8
DDX55Q8NHQ9 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC21.03■□□□□ 0.961e-7■■■■■ 46.8
DDX55Q8NHQ9 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.851e-7■■■■■ 46.8
DDX55Q8NHQ9 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC20.07■□□□□ 0.81e-7■■■■■ 46.8
DDX55Q8NHQ9 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC19.96■□□□□ 0.791e-7■■■■■ 46.8
DDX55Q8NHQ9 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC19.95■□□□□ 0.781e-7■■■■■ 46.8
DDX55Q8NHQ9 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.651e-7■■■■■ 46.8
DDX55Q8NHQ9 PAPD5-204ENST00000562717 1866 ntTSL 518.03■□□□□ 0.481e-7■■■■■ 46.8
DDX55Q8NHQ9 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.441e-7■■■■■ 46.8
DDX55Q8NHQ9 ZWINT-205ENST00000460654 830 ntTSL 317.61■□□□□ 0.412e-17■■■■■ 46.8
DDX55Q8NHQ9 TMEM177-203ENST00000409951 1216 ntTSL 1 (best) BASIC17.61■□□□□ 0.411e-7■■■■■ 46.8
DDX55Q8NHQ9 TMEM177-202ENST00000401466 1346 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.341e-7■■■■■ 46.8
DDX55Q8NHQ9 INO80-201ENST00000361937 6439 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.21e-7■■■■■ 46.8
DDX55Q8NHQ9 ZWINT-208ENST00000489649 1621 ntTSL 516.27■□□□□ 0.22e-17■■■■■ 46.8
DDX55Q8NHQ9 SUSD2-202ENST00000463101 4938 ntTSL 215.94■□□□□ 0.141e-7■■■■■ 46.8
DDX55Q8NHQ9 AL139260.2-201ENST00000622355 2171 ntTSL 2 BASIC15.82■□□□□ 0.121e-9■■■■■ 46.8
DDX55Q8NHQ9 ZWINT-209ENST00000494312 1961 ntTSL 215.46■□□□□ 0.072e-17■■■■■ 46.8
DDX55Q8NHQ9 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.061e-7■■■■■ 46.8
DDX55Q8NHQ9 INO80-202ENST00000401393 5991 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.041e-7■■■■■ 46.8
DDX55Q8NHQ9 ZWINT-203ENST00000373944 1872 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.122e-17■■■■■ 46.8
DDX55Q8NHQ9 MYCBP-201ENST00000397572 2818 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.191e-9■■■■■ 46.8
DDX55Q8NHQ9 ZWINT-201ENST00000318387 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.392e-17■■■■■ 46.8
DDX55Q8NHQ9 ZWINT-204ENST00000395405 1851 ntAPPRIS P3 TSL 2 BASIC12.27□□□□□ -0.452e-17■■■■■ 46.8
DDX55Q8NHQ9 CSTF3-201ENST00000323959 2797 ntAPPRIS P1 TSL 1 (best) BASIC8.87□□□□□ -0.991e-7■■■■■ 46.8
DDX55Q8NHQ9 CSTF3-208ENST00000528865 592 ntTSL 58.75□□□□□ -1.011e-7■■■■■ 46.8
DDX55Q8NHQ9 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC15.82■□□□□ 0.127e-10■■■■■ 45.9
DDX55Q8NHQ9 TRAFD1-202ENST00000412615 2697 ntAPPRIS P2 TSL 1 (best) BASIC12.26□□□□□ -0.457e-10■■■■■ 45.9
DDX55Q8NHQ9 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.193e-7■■■■■ 45.7
DDX55Q8NHQ9 CYSTM1-204ENST00000509789 813 ntTSL 416.26■□□□□ 0.193e-7■■■■■ 45.7
DDX55Q8NHQ9 CYSTM1-202ENST00000504227 588 ntTSL 516.26■□□□□ 0.193e-7■■■■■ 45.7
DDX55Q8NHQ9 CYSTM1-203ENST00000509589 665 ntTSL 313.04□□□□□ -0.323e-7■■■■■ 45.7
DDX55Q8NHQ9 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.272e-6■■■■■ 45.6
DDX55Q8NHQ9 AC068896.1-201ENST00000494792 3422 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.422e-6■■■■■ 45.6
DDX55Q8NHQ9 BCL7C-204ENST00000574418 1206 ntTSL 531.22■■■□□ 2.598e-8■■■■■ 44.5
Retrieved 100 of 15,504 protein–RNA pairs in 38.3 ms