Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 AMT-207ENST00000461210 850 ntTSL 210.81□□□□□ -0.685e-9■■■■■ 55.3
DDX55Q8NHQ9 AMT-209ENST00000465925 3976 ntTSL 59.7□□□□□ -0.865e-9■■■■■ 55.3
DDX55Q8NHQ9 RALGAPB-202ENST00000397040 8435 ntAPPRIS P3 TSL 1 (best) BASIC5.71□□□□□ -1.55e-9■■■■■ 55.3
DDX55Q8NHQ9 ARPC5-204ENST00000462965 2455 ntTSL 24.65□□□□□ -1.675e-9■■■■■ 55.3
DDX55Q8NHQ9 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC20.86■□□□□ 0.939e-13■■■■■ 54.6
DDX55Q8NHQ9 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.879e-13■■■■■ 54.6
DDX55Q8NHQ9 KANSL1-208ENST00000574590 5147 ntAPPRIS ALT1 TSL 2 BASIC13.35□□□□□ -0.279e-13■■■■■ 54.6
DDX55Q8NHQ9 KANSL1-215ENST00000576870 2848 ntTSL 213.27□□□□□ -0.299e-13■■■■■ 54.6
DDX55Q8NHQ9 KANSL1-201ENST00000262419 5309 ntAPPRIS P3 TSL 1 (best) BASIC12.38□□□□□ -0.439e-13■■■■■ 54.6
DDX55Q8NHQ9 KANSL1-211ENST00000575318 4935 ntTSL 5 BASIC12.25□□□□□ -0.459e-13■■■■■ 54.6
DDX55Q8NHQ9 KANSL1-204ENST00000572218 9095 ntTSL 1 (best)10.12□□□□□ -0.799e-13■■■■■ 54.6
DDX55Q8NHQ9 KANSL1-205ENST00000572904 4973 ntAPPRIS P3 TSL 5 BASIC10.06□□□□□ -0.89e-13■■■■■ 54.6
DDX55Q8NHQ9 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.233e-8■■■■■ 52
DDX55Q8NHQ9 ATP6V1B2-204ENST00000521442 738 ntTSL 310.02□□□□□ -0.813e-8■■■■■ 52
DDX55Q8NHQ9 ATP6V1B2-206ENST00000523482 6907 ntTSL 26.34□□□□□ -1.43e-8■■■■■ 52
DDX55Q8NHQ9 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.616e-7■■■■■ 51.7
DDX55Q8NHQ9 CXADR-205ENST00000400169 1445 ntAPPRIS ALT2 TSL 5 BASIC5.61□□□□□ -1.516e-7■■■■■ 51.7
DDX55Q8NHQ9 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC30.41■■■□□ 2.461e-8■■■■■ 51.1
DDX55Q8NHQ9 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC27.39■■□□□ 1.971e-8■■■■■ 51.1
DDX55Q8NHQ9 TMEM55B-203ENST00000553460 811 ntTSL 520.19■□□□□ 0.821e-8■■■■■ 51.1
DDX55Q8NHQ9 TMEM55B-207ENST00000557041 3453 ntTSL 216.16■□□□□ 0.181e-8■■■■■ 51.1
DDX55Q8NHQ9 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC33.27■■■□□ 2.922e-8■■■■■ 51
DDX55Q8NHQ9 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC32.78■■■□□ 2.842e-8■■■■■ 51
DDX55Q8NHQ9 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.182e-8■■■■■ 51
DDX55Q8NHQ9 GIPC1-204ENST00000585606 2071 ntTSL 221.2■□□□□ 0.982e-8■■■■■ 51
DDX55Q8NHQ9 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.474e-15■■■■■ 51
DDX55Q8NHQ9 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC16.49■□□□□ 0.234e-15■■■■■ 51
DDX55Q8NHQ9 VGLL4-201ENST00000273038 3725 ntTSL 1 (best) BASIC12.36□□□□□ -0.432e-8■■■■■ 51
DDX55Q8NHQ9 SMARCD1-206ENST00000549274 611 ntTSL 311.49□□□□□ -0.572e-8■■■■■ 51
DDX55Q8NHQ9 AC073869.1-202ENST00000438378 3785 ntTSL 1 (best) BASIC11.33□□□□□ -0.62e-8■■■■■ 51
DDX55Q8NHQ9 SMARCD1-205ENST00000548573 2095 ntTSL 5 BASIC10.21□□□□□ -0.772e-8■■■■■ 51
DDX55Q8NHQ9 UBR5-202ENST00000517465 1095 ntTSL 25.16□□□□□ -1.584e-15■■■■■ 51
DDX55Q8NHQ9 SLIRP-208ENST00000556956 450 ntTSL 23.02□□□□□ -1.932e-8■■■■■ 51
DDX55Q8NHQ9 PTMS-202ENST00000389462 773 ntTSL 2 BASIC20.33■□□□□ 0.852e-14■■■■■ 50.7
DDX55Q8NHQ9 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.993e-8■■■■■ 48.9
DDX55Q8NHQ9 MTMR12-202ENST00000280285 4966 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.453e-8■■■■■ 48.9
DDX55Q8NHQ9 GPX2-205ENST00000612794 1084 ntAPPRIS ALT1 TSL 5 BASIC12.72□□□□□ -0.379e-11■■■■■ 48.8
DDX55Q8NHQ9 GPX2-202ENST00000553522 1134 ntTSL 1 (best)12.55□□□□□ -0.49e-11■■■■■ 48.8
DDX55Q8NHQ9 GPX2-201ENST00000389614 990 ntAPPRIS P2 TSL 1 (best) BASIC9.73□□□□□ -0.859e-11■■■■■ 48.8
DDX55Q8NHQ9 RBM5-212ENST00000464087 5616 ntTSL 29.12□□□□□ -0.952e-9■■■■■ 48.7
DDX55Q8NHQ9 RBM5-201ENST00000347869 3188 ntAPPRIS P1 TSL 1 (best) BASIC9.05□□□□□ -0.962e-9■■■■■ 48.7
DDX55Q8NHQ9 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC20.47■□□□□ 0.878e-11■■■■■ 48.6
DDX55Q8NHQ9 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.288e-11■■■■■ 48.6
DDX55Q8NHQ9 FKBP9-214ENST00000538336 3621 ntTSL 2 BASIC15.81■□□□□ 0.128e-11■■■■■ 48.6
DDX55Q8NHQ9 PFKFB3-203ENST00000379775 4483 ntTSL 1 (best) BASIC13.41□□□□□ -0.268e-11■■■■■ 48.6
DDX55Q8NHQ9 PFKFB3-205ENST00000379789 4157 ntTSL 1 (best) BASIC12.13□□□□□ -0.478e-11■■■■■ 48.6
DDX55Q8NHQ9 FKBP9-212ENST00000490776 2699 ntTSL 2 BASIC11.28□□□□□ -0.68e-11■■■■■ 48.6
DDX55Q8NHQ9 SH3BP5L-203ENST00000484202 3110 ntTSL 217.06■□□□□ 0.322e-10■■■■■ 48.2
DDX55Q8NHQ9 ADGB-210ENST00000522242 607 ntTSL 415.77■□□□□ 0.125e-7■■■■■ 48.1
DDX55Q8NHQ9 ADGB-205ENST00000397944 5325 ntAPPRIS P5 TSL 5 BASIC7.04□□□□□ -1.285e-7■■■■■ 48.1
DDX55Q8NHQ9 ADGB-202ENST00000326929 2328 ntTSL 26.25□□□□□ -1.415e-7■■■■■ 48.1
DDX55Q8NHQ9 ADGB-211ENST00000522396 571 ntTSL 45.4□□□□□ -1.545e-7■■■■■ 48.1
DDX55Q8NHQ9 ADGB-209ENST00000493950 6779 ntTSL 1 (best)4.63□□□□□ -1.675e-7■■■■■ 48.1
DDX55Q8NHQ9 PRDX2-204ENST00000477555 699 ntTSL 213.57□□□□□ -0.245e-9■■■■■ 47.7
DDX55Q8NHQ9 PRDX2-205ENST00000478908 413 ntTSL 213.22□□□□□ -0.295e-9■■■■■ 47.7
DDX55Q8NHQ9 PRDX2-206ENST00000498785 505 ntTSL 212.83□□□□□ -0.365e-9■■■■■ 47.7
DDX55Q8NHQ9 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC24.35■■□□□ 1.491e-7■■■■■ 46.8
DDX55Q8NHQ9 FDXR-218ENST00000583881 1561 ntTSL 224.25■■□□□ 1.471e-7■■■■■ 46.8
DDX55Q8NHQ9 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC23.67■■□□□ 1.381e-7■■■■■ 46.8
DDX55Q8NHQ9 FDXR-206ENST00000577509 1912 ntTSL 223.31■■□□□ 1.321e-7■■■■■ 46.8
DDX55Q8NHQ9 FDXR-209ENST00000579482 2157 ntTSL 221.92■■□□□ 1.11e-7■■■■■ 46.8
DDX55Q8NHQ9 FDXR-208ENST00000578473 2482 ntTSL 1 (best)21.88■■□□□ 1.091e-7■■■■■ 46.8
DDX55Q8NHQ9 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC21.85■■□□□ 1.091e-7■■■■■ 46.8
DDX55Q8NHQ9 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC21.63■■□□□ 1.051e-7■■■■■ 46.8
DDX55Q8NHQ9 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 11e-7■■■■■ 46.8
DDX55Q8NHQ9 TMEM177-206ENST00000496203 881 ntTSL 1 (best)21.15■□□□□ 0.981e-7■■■■■ 46.8
DDX55Q8NHQ9 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.971e-7■■■■■ 46.8
DDX55Q8NHQ9 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC21.03■□□□□ 0.961e-7■■■■■ 46.8
DDX55Q8NHQ9 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.851e-7■■■■■ 46.8
DDX55Q8NHQ9 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC20.07■□□□□ 0.81e-7■■■■■ 46.8
DDX55Q8NHQ9 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC19.96■□□□□ 0.791e-7■■■■■ 46.8
DDX55Q8NHQ9 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC19.95■□□□□ 0.781e-7■■■■■ 46.8
DDX55Q8NHQ9 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.651e-7■■■■■ 46.8
DDX55Q8NHQ9 PAPD5-204ENST00000562717 1866 ntTSL 518.03■□□□□ 0.481e-7■■■■■ 46.8
DDX55Q8NHQ9 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.441e-7■■■■■ 46.8
DDX55Q8NHQ9 ZWINT-205ENST00000460654 830 ntTSL 317.61■□□□□ 0.412e-17■■■■■ 46.8
DDX55Q8NHQ9 TMEM177-203ENST00000409951 1216 ntTSL 1 (best) BASIC17.61■□□□□ 0.411e-7■■■■■ 46.8
DDX55Q8NHQ9 TMEM177-202ENST00000401466 1346 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.341e-7■■■■■ 46.8
DDX55Q8NHQ9 INO80-201ENST00000361937 6439 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.21e-7■■■■■ 46.8
DDX55Q8NHQ9 ZWINT-208ENST00000489649 1621 ntTSL 516.27■□□□□ 0.22e-17■■■■■ 46.8
DDX55Q8NHQ9 SUSD2-202ENST00000463101 4938 ntTSL 215.94■□□□□ 0.141e-7■■■■■ 46.8
DDX55Q8NHQ9 AL139260.2-201ENST00000622355 2171 ntTSL 2 BASIC15.82■□□□□ 0.121e-9■■■■■ 46.8
DDX55Q8NHQ9 ZWINT-209ENST00000494312 1961 ntTSL 215.46■□□□□ 0.072e-17■■■■■ 46.8
DDX55Q8NHQ9 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.061e-7■■■■■ 46.8
DDX55Q8NHQ9 INO80-202ENST00000401393 5991 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.041e-7■■■■■ 46.8
DDX55Q8NHQ9 ZWINT-203ENST00000373944 1872 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.122e-17■■■■■ 46.8
DDX55Q8NHQ9 MYCBP-201ENST00000397572 2818 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.191e-9■■■■■ 46.8
DDX55Q8NHQ9 ZWINT-201ENST00000318387 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.392e-17■■■■■ 46.8
DDX55Q8NHQ9 ZWINT-204ENST00000395405 1851 ntAPPRIS P3 TSL 2 BASIC12.27□□□□□ -0.452e-17■■■■■ 46.8
DDX55Q8NHQ9 CSTF3-201ENST00000323959 2797 ntAPPRIS P1 TSL 1 (best) BASIC8.87□□□□□ -0.991e-7■■■■■ 46.8
DDX55Q8NHQ9 CSTF3-208ENST00000528865 592 ntTSL 58.75□□□□□ -1.011e-7■■■■■ 46.8
DDX55Q8NHQ9 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC15.82■□□□□ 0.127e-10■■■■■ 45.9
DDX55Q8NHQ9 TRAFD1-202ENST00000412615 2697 ntAPPRIS P2 TSL 1 (best) BASIC12.26□□□□□ -0.457e-10■■■■■ 45.9
DDX55Q8NHQ9 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.193e-7■■■■■ 45.7
DDX55Q8NHQ9 CYSTM1-204ENST00000509789 813 ntTSL 416.26■□□□□ 0.193e-7■■■■■ 45.7
DDX55Q8NHQ9 CYSTM1-202ENST00000504227 588 ntTSL 516.26■□□□□ 0.193e-7■■■■■ 45.7
DDX55Q8NHQ9 CYSTM1-203ENST00000509589 665 ntTSL 313.04□□□□□ -0.323e-7■■■■■ 45.7
DDX55Q8NHQ9 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.272e-6■■■■■ 45.6
DDX55Q8NHQ9 AC068896.1-201ENST00000494792 3422 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.422e-6■■■■■ 45.6
DDX55Q8NHQ9 BCL7C-204ENST00000574418 1206 ntTSL 531.22■■■□□ 2.598e-8■■■■■ 44.5
Retrieved 100 of 15,504 protein–RNA pairs in 247.4 ms