RNA–Protein interactions for RNA: ENST00000528865.5

CSTF3-208, Transcript of cleavage stimulation factor subunit 3, human

TSL 5

Gene CSTF3, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CSTF3-208	ENST00000528865	NISCH	Q9Y2I1	1504 aa		17.44	■□□□□ 0.38
CSTF3-208	ENST00000528865	CCDC180	Q9P1Z9	1646 aa		14.84	□□□□□ -0.03
CSTF3-208	ENST00000528865	ZCCHC6	Q5VYS8	1495 aa	Known RBP	14.76	□□□□□ -0.05
CSTF3-208	ENST00000528865	SHROOM4	Q9ULL8	1493 aa		14.63	□□□□□ -0.07
CSTF3-208	ENST00000528865	DCAF1	Q9Y4B6	1507 aa		14.44	□□□□□ -0.1
CSTF3-208	ENST00000528865	SUPT5H	O00267	1087 aa	Known RBP	14.41	□□□□□ -0.1
CSTF3-208	ENST00000528865	DCAF8L2	P0C7V8	631 aa		14.2	□□□□□ -0.14
CSTF3-208	ENST00000528865	CHIC1	Q5VXU3	224 aa		14.18	□□□□□ -0.14
CSTF3-208	ENST00000528865	MYO15B	Q96JP2	1530 aa		14.04	□□□□□ -0.16
CSTF3-208	ENST00000528865	ABCC9	O60706	1549 aa		13.88	□□□□□ -0.19
CSTF3-208	ENST00000528865	RSF1	Q96T23	1441 aa	Predicted RBP	13.8	□□□□□ -0.2
CSTF3-208	ENST00000528865	HRC	P23327	699 aa		13.76	□□□□□ -0.21
CSTF3-208	ENST00000528865	SCRIB	Q14160	1630 aa		13.74	□□□□□ -0.21
CSTF3-208	ENST00000528865	NACAD	O15069	1562 aa		13.74	□□□□□ -0.21
CSTF3-208	ENST00000528865	LOC105371045	A0A1W2PR82	267 aa		13.65	□□□□□ -0.22
CSTF3-208	ENST00000528865	RB1CC1	Q8TDY2	1594 aa		13.65	□□□□□ -0.22
CSTF3-208	ENST00000528865	PCGF6	Q9BYE7	350 aa		13.62	□□□□□ -0.23
CSTF3-208	ENST00000528865	CECR2	Q9BXF3	1484 aa		13.53	□□□□□ -0.24
CSTF3-208	ENST00000528865	TRIM41	Q8WV44	630 aa		13.51	□□□□□ -0.25
CSTF3-208	ENST00000528865	MROH2B	Q7Z745	1585 aa		13.5	□□□□□ -0.25
CSTF3-208	ENST00000528865	TRIM26	Q12899	539 aa	Predicted RBP	13.5	□□□□□ -0.25
CSTF3-208	ENST00000528865	WIZ	O95785	1651 aa		13.38	□□□□□ -0.27
CSTF3-208	ENST00000528865	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	13.38	□□□□□ -0.27
CSTF3-208	ENST00000528865	EIF4G1	Q04637	1599 aa	Known RBP	13.32	□□□□□ -0.28
CSTF3-208	ENST00000528865	PPARGC1B	Q86YN6	1023 aa	Known RBP	13.31	□□□□□ -0.28
CSTF3-208	ENST00000528865	ZEB1	P37275	1124 aa	Predicted RBP	13.29	□□□□□ -0.28
CSTF3-208	ENST00000528865	FAM9A	Q8IZU1	332 aa	Predicted RBP	13.27	□□□□□ -0.29
CSTF3-208	ENST00000528865	TOP2A	P11388	1531 aa	Known RBP	13.27	□□□□□ -0.29
CSTF3-208	ENST00000528865	SMARCA4	P51532	1647 aa		13.23	□□□□□ -0.29
CSTF3-208	ENST00000528865	CCDC88B	A6NC98	1476 aa		13.19	□□□□□ -0.3
CSTF3-208	ENST00000528865	SMARCA2	P51531	1590 aa		13.17	□□□□□ -0.3
CSTF3-208	ENST00000528865	UNC13A	Q9UPW8	1703 aa		13.16	□□□□□ -0.3
CSTF3-208	ENST00000528865	PEG3	Q9GZU2	1588 aa		13.09	□□□□□ -0.31
CSTF3-208	ENST00000528865	BICRA	Q9NZM4	1560 aa		13.08	□□□□□ -0.32
CSTF3-208	ENST00000528865	EEA1	Q15075	1411 aa		13.08	□□□□□ -0.32
CSTF3-208	ENST00000528865	WRN	Q14191	1432 aa	Predicted RBP eCLIP	13.07	□□□□□ -0.32
CSTF3-208	ENST00000528865	ABCC8	Q09428	1581 aa		13.04	□□□□□ -0.32
CSTF3-208	ENST00000528865	TNIK	Q9UKE5	1360 aa		13.04	□□□□□ -0.32
CSTF3-208	ENST00000528865	EHMT2	Q96KQ7	1210 aa		13.01	□□□□□ -0.33
CSTF3-208	ENST00000528865	CSRNP3	Q8WYN3	585 aa		13	□□□□□ -0.33
CSTF3-208	ENST00000528865	SOGA1	O94964	1423 aa		12.99	□□□□□ -0.33
CSTF3-208	ENST00000528865	PABPN1	Q86U42	306 aa	Known RBP eCLIP	12.96	□□□□□ -0.33
CSTF3-208	ENST00000528865	CEP162	Q5TB80	1403 aa		12.95	□□□□□ -0.34
CSTF3-208	ENST00000528865	ATAD2B	Q9ULI0	1458 aa		12.93	□□□□□ -0.34
CSTF3-208	ENST00000528865	RUSC2	Q8N2Y8	1516 aa		12.92	□□□□□ -0.34
CSTF3-208	ENST00000528865	GOLGA3	Q08378	1498 aa		12.9	□□□□□ -0.34
CSTF3-208	ENST00000528865	BAZ1B	Q9UIG0	1483 aa	Known RBP	12.84	□□□□□ -0.35
CSTF3-208	ENST00000528865	KIF21B	O75037	1637 aa		12.84	□□□□□ -0.35
CSTF3-208	ENST00000528865	UBTF	P17480	764 aa	Known RBP	12.83	□□□□□ -0.36
CSTF3-208	ENST00000528865	CEP164	Q9UPV0	1460 aa		12.83	□□□□□ -0.36
CSTF3-208	ENST00000528865	SYNJ1	O43426	1573 aa		12.82	□□□□□ -0.36
CSTF3-208	ENST00000528865	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	12.81	□□□□□ -0.36
CSTF3-208	ENST00000528865	CCER1	Q8TC90	406 aa	Predicted RBP	12.81	□□□□□ -0.36
CSTF3-208	ENST00000528865	NCAPD3	P42695	1498 aa		12.73	□□□□□ -0.37
CSTF3-208	ENST00000528865	TOP2B	Q02880	1626 aa		12.73	□□□□□ -0.37
CSTF3-208	ENST00000528865	CLIP1	P30622	1438 aa		12.72	□□□□□ -0.37
CSTF3-208	ENST00000528865	VPS8	Q8N3P4	1428 aa		12.71	□□□□□ -0.38
CSTF3-208	ENST00000528865	HMGXB3	Q12766	1538 aa		12.69	□□□□□ -0.38
CSTF3-208	ENST00000528865	BIVM-ERCC5	R4GMW8	1640 aa		12.69	□□□□□ -0.38
CSTF3-208	ENST00000528865	RAPGEF2	Q9Y4G8	1499 aa		12.68	□□□□□ -0.38
CSTF3-208	ENST00000528865	PRX	Q9BXM0	1461 aa		12.65	□□□□□ -0.38
CSTF3-208	ENST00000528865	ERICH3	Q5RHP9	1530 aa		12.65	□□□□□ -0.38
CSTF3-208	ENST00000528865	TTBK1	Q5TCY1	1321 aa	Predicted RBP	12.62	□□□□□ -0.39
CSTF3-208	ENST00000528865	SCAF1	Q9H7N4	1312 aa	Known RBP	12.62	□□□□□ -0.39
CSTF3-208	ENST00000528865	DIEXF	Q68CQ4	756 aa	Known RBP	12.61	□□□□□ -0.39
CSTF3-208	ENST00000528865	CFTR	P13569	1480 aa		12.6	□□□□□ -0.39
CSTF3-208	ENST00000528865	ZNF316	A6NFI3	1004 aa	Predicted RBP	12.59	□□□□□ -0.39
CSTF3-208	ENST00000528865	CUX1	P39880	1505 aa		12.57	□□□□□ -0.4
CSTF3-208	ENST00000528865	APLP2	Q06481	763 aa		12.57	□□□□□ -0.4
CSTF3-208	ENST00000528865	ACIN1	Q9UKV3	1341 aa	Known RBP	12.57	□□□□□ -0.4
CSTF3-208	ENST00000528865	KIF27	Q86VH2	1401 aa		12.55	□□□□□ -0.4
CSTF3-208	ENST00000528865	ARAP1	Q96P48	1450 aa		12.53	□□□□□ -0.4
CSTF3-208	ENST00000528865	HNRNPUL2	Q1KMD3	747 aa	Known RBP	12.52	□□□□□ -0.41
CSTF3-208	ENST00000528865	PELP1	Q8IZL8	1130 aa	Known RBP	12.52	□□□□□ -0.41
CSTF3-208	ENST00000528865	CLSPN	Q9HAW4	1339 aa		12.51	□□□□□ -0.41
CSTF3-208	ENST00000528865	NEUROD1	Q13562	356 aa		12.49	□□□□□ -0.41
CSTF3-208	ENST00000528865	CENPB	P07199	599 aa	Predicted RBP	12.47	□□□□□ -0.41
CSTF3-208	ENST00000528865	AEBP2	Q6ZN18	517 aa	Predicted RBP	12.47	□□□□□ -0.41
CSTF3-208	ENST00000528865	RRBP1	Q9P2E9	1410 aa	Known RBP	12.45	□□□□□ -0.42
CSTF3-208	ENST00000528865	IGF1R	P08069	1367 aa		12.44	□□□□□ -0.42
CSTF3-208	ENST00000528865	CADPS	Q9ULU8	1353 aa		12.44	□□□□□ -0.42
CSTF3-208	ENST00000528865	PRDM2	Q13029	1718 aa		12.43	□□□□□ -0.42
CSTF3-208	ENST00000528865	KANK4	Q5T7N3	995 aa	Predicted RBP	12.43	□□□□□ -0.42
CSTF3-208	ENST00000528865	CUX2	O14529	1486 aa		12.42	□□□□□ -0.42
CSTF3-208	ENST00000528865	ARHGAP35	Q9NRY4	1499 aa		12.42	□□□□□ -0.42
CSTF3-208	ENST00000528865	DHX57	Q6P158	1386 aa	Known RBP	12.42	□□□□□ -0.42
CSTF3-208	ENST00000528865	MAP3K1	Q13233	1512 aa		12.41	□□□□□ -0.42
CSTF3-208	ENST00000528865	RANGAP1	P46060	587 aa	Predicted RBP	12.39	□□□□□ -0.43
CSTF3-208	ENST00000528865	CARMIL1	Q5VZK9	1371 aa		12.36	□□□□□ -0.43
CSTF3-208	ENST00000528865	CCNB3	Q8WWL7	1395 aa		12.34	□□□□□ -0.43
CSTF3-208	ENST00000528865	MIER1	Q8N108	512 aa		12.34	□□□□□ -0.43
CSTF3-208	ENST00000528865	GTF3C3	Q9Y5Q9	886 aa		12.33	□□□□□ -0.44
CSTF3-208	ENST00000528865	FGD5	Q6ZNL6	1462 aa		12.33	□□□□□ -0.44
CSTF3-208	ENST00000528865	TIAM1	Q13009	1591 aa		12.28	□□□□□ -0.44
CSTF3-208	ENST00000528865	FHAD1	B1AJZ9	1412 aa		12.27	□□□□□ -0.45
CSTF3-208	ENST00000528865	FANCD2	Q9BXW9	1451 aa		12.27	□□□□□ -0.45
CSTF3-208	ENST00000528865	CC2D2A	Q9P2K1	1620 aa		12.26	□□□□□ -0.45
CSTF3-208	ENST00000528865	LRRC9	Q6ZRR7	1453 aa		12.26	□□□□□ -0.45
CSTF3-208	ENST00000528865	ABCA10	Q8WWZ4	1543 aa		12.26	□□□□□ -0.45
CSTF3-208	ENST00000528865	DNMBP	Q6XZF7	1577 aa		12.25	□□□□□ -0.45

Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms