Protein–RNA interactions for Protein: Q8NB14

USP38, Ubiquitin carboxyl-terminal hydrolase 38, humanhuman

Predictions only

Length 1,042 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP38Q8NB14 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC32.5■■■□□ 2.79
USP38Q8NB14 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC32.47■■■□□ 2.79
USP38Q8NB14 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC32.43■■■□□ 2.78
USP38Q8NB14 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC32.41■■■□□ 2.78
USP38Q8NB14 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC32.39■■■□□ 2.78
USP38Q8NB14 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC32.36■■■□□ 2.77
USP38Q8NB14 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC32.33■■■□□ 2.77
USP38Q8NB14 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC32.33■■■□□ 2.77
USP38Q8NB14 DYNLL1-208ENST00000550178 581 ntBASIC32.33■■■□□ 2.77
USP38Q8NB14 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC32.29■■■□□ 2.76
USP38Q8NB14 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC32.27■■■□□ 2.76
USP38Q8NB14 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC32.27■■■□□ 2.76
USP38Q8NB14 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC32.26■■■□□ 2.75
USP38Q8NB14 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC32.26■■■□□ 2.75
USP38Q8NB14 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC32.26■■■□□ 2.75
USP38Q8NB14 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC32.23■■■□□ 2.75
USP38Q8NB14 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC32.23■■■□□ 2.75
USP38Q8NB14 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC32.2■■■□□ 2.75
USP38Q8NB14 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC32.19■■■□□ 2.74
USP38Q8NB14 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC32.19■■■□□ 2.74
USP38Q8NB14 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC32.18■■■□□ 2.74
USP38Q8NB14 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC32.16■■■□□ 2.74
USP38Q8NB14 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC32.11■■■□□ 2.73
USP38Q8NB14 AL031258.1-201ENST00000623562 325 ntBASIC32.11■■■□□ 2.73
USP38Q8NB14 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC32.09■■■□□ 2.73
USP38Q8NB14 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC32.08■■■□□ 2.73
USP38Q8NB14 ILK-212ENST00000532063 1617 ntTSL 2 BASIC32.07■■■□□ 2.72
USP38Q8NB14 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC32.05■■■□□ 2.72
USP38Q8NB14 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC32.04■■■□□ 2.72
USP38Q8NB14 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC32.04■■■□□ 2.72
USP38Q8NB14 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC32.02■■■□□ 2.72
USP38Q8NB14 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC32.01■■■□□ 2.71
USP38Q8NB14 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC32■■■□□ 2.71
USP38Q8NB14 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC32■■■□□ 2.71
USP38Q8NB14 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC31.99■■■□□ 2.71
USP38Q8NB14 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC31.99■■■□□ 2.71
USP38Q8NB14 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC31.99■■■□□ 2.71
USP38Q8NB14 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC31.99■■■□□ 2.71
USP38Q8NB14 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC31.97■■■□□ 2.71
USP38Q8NB14 RPS2P35-201ENST00000443417 897 ntBASIC31.96■■■□□ 2.71
USP38Q8NB14 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC31.95■■■□□ 2.71
USP38Q8NB14 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC31.89■■■□□ 2.7
USP38Q8NB14 RARRES2P7-201ENST00000567349 469 ntBASIC31.86■■■□□ 2.69
USP38Q8NB14 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC31.81■■■□□ 2.68
USP38Q8NB14 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC31.8■■■□□ 2.68
USP38Q8NB14 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
USP38Q8NB14 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC31.79■■■□□ 2.68
USP38Q8NB14 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC31.78■■■□□ 2.68
USP38Q8NB14 AC097358.2-201ENST00000607541 1159 ntBASIC31.74■■■□□ 2.67
USP38Q8NB14 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC31.72■■■□□ 2.67
USP38Q8NB14 EBPL-203ENST00000378270 579 ntTSL 2 BASIC31.72■■■□□ 2.67
USP38Q8NB14 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC31.72■■■□□ 2.67
USP38Q8NB14 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.67
USP38Q8NB14 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
USP38Q8NB14 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
USP38Q8NB14 SUZ12P1-203ENST00000578195 985 ntBASIC31.66■■■□□ 2.66
USP38Q8NB14 AC136428.2-201ENST00000563187 214 ntBASIC31.64■■■□□ 2.66
USP38Q8NB14 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.65
USP38Q8NB14 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC31.63■■■□□ 2.65
USP38Q8NB14 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC31.58■■■□□ 2.65
USP38Q8NB14 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC31.58■■■□□ 2.65
USP38Q8NB14 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC31.55■■■□□ 2.64
USP38Q8NB14 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC31.51■■■□□ 2.63
USP38Q8NB14 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC31.51■■■□□ 2.63
USP38Q8NB14 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC31.49■■■□□ 2.63
USP38Q8NB14 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
USP38Q8NB14 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC31.49■■■□□ 2.63
USP38Q8NB14 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
USP38Q8NB14 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC31.47■■■□□ 2.63
USP38Q8NB14 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
USP38Q8NB14 SETD8P1-201ENST00000623146 1180 ntBASIC31.45■■■□□ 2.63
USP38Q8NB14 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC31.45■■■□□ 2.62
USP38Q8NB14 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
USP38Q8NB14 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
USP38Q8NB14 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC31.4■■■□□ 2.62
USP38Q8NB14 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC31.4■■■□□ 2.62
USP38Q8NB14 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
USP38Q8NB14 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC31.39■■■□□ 2.62
USP38Q8NB14 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC31.39■■■□□ 2.62
USP38Q8NB14 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
USP38Q8NB14 KLF16-203ENST00000592313 508 ntTSL 3 BASIC31.37■■■□□ 2.61
USP38Q8NB14 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC31.37■■■□□ 2.61
USP38Q8NB14 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
USP38Q8NB14 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
USP38Q8NB14 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC31.35■■■□□ 2.61
USP38Q8NB14 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC31.33■■■□□ 2.61
USP38Q8NB14 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC31.33■■■□□ 2.61
USP38Q8NB14 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC31.32■■■□□ 2.6
USP38Q8NB14 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC31.3■■■□□ 2.6
USP38Q8NB14 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC31.29■■■□□ 2.6
USP38Q8NB14 MVK-208ENST00000539696 608 ntTSL 5 BASIC31.29■■■□□ 2.6
USP38Q8NB14 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC31.28■■■□□ 2.6
USP38Q8NB14 AC145285.7-201ENST00000614819 1539 ntBASIC31.28■■■□□ 2.6
USP38Q8NB14 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC31.27■■■□□ 2.6
USP38Q8NB14 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC31.22■■■□□ 2.59
USP38Q8NB14 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC31.2■■■□□ 2.59
USP38Q8NB14 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.58
USP38Q8NB14 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
USP38Q8NB14 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC31.16■■■□□ 2.58
USP38Q8NB14 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC31.15■■■□□ 2.58
Retrieved 100 of 98,524 protein–RNA pairs in 9.8 ms