Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC42.01■■■■■ 4.31
MSH6P52701 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC42■■■■■ 4.31
MSH6P52701 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC41.99■■■■■ 4.31
MSH6P52701 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC41.95■■■■■ 4.31
MSH6P52701 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC41.92■■■■■ 4.3
MSH6P52701 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC41.89■■■■■ 4.3
MSH6P52701 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC41.87■■■■■ 4.29
MSH6P52701 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC41.85■■■■■ 4.29
MSH6P52701 RARRES2P7-201ENST00000567349 469 ntBASIC41.85■■■■■ 4.29
MSH6P52701 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC41.81■■■■■ 4.28
MSH6P52701 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC41.66■■■■■ 4.26
MSH6P52701 AC097358.2-201ENST00000607541 1159 ntBASIC41.58■■■■■ 4.25
MSH6P52701 RPS2P35-201ENST00000443417 897 ntBASIC41.51■■■■■ 4.24
MSH6P52701 AC136428.2-201ENST00000563187 214 ntBASIC41.49■■■■■ 4.23
MSH6P52701 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC41.48■■■■■ 4.23
MSH6P52701 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC41.47■■■■■ 4.23
MSH6P52701 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC41.45■■■■■ 4.23
MSH6P52701 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC41.44■■■■■ 4.22
MSH6P52701 SUZ12P1-203ENST00000578195 985 ntBASIC41.42■■■■■ 4.22
MSH6P52701 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC41.42■■■■■ 4.22
MSH6P52701 SETD8P1-201ENST00000623146 1180 ntBASIC41.35■■■■■ 4.21
MSH6P52701 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC41.35■■■■■ 4.21
MSH6P52701 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC41.29■■■■■ 4.2
MSH6P52701 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC41.28■■■■■ 4.2
MSH6P52701 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC41.28■■■■■ 4.2
MSH6P52701 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC41.27■■■■■ 4.2
MSH6P52701 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC41.27■■■■■ 4.2
MSH6P52701 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC41.22■■■■■ 4.19
MSH6P52701 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC41.19■■■■■ 4.18
MSH6P52701 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC41.18■■■■■ 4.18
MSH6P52701 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC41.17■■■■■ 4.18
MSH6P52701 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC41.14■■■■■ 4.18
MSH6P52701 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC41.14■■■■■ 4.18
MSH6P52701 EBPL-203ENST00000378270 579 ntTSL 2 BASIC41.13■■■■■ 4.18
MSH6P52701 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC41.12■■■■■ 4.17
MSH6P52701 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC41.11■■■■■ 4.17
MSH6P52701 KLF16-203ENST00000592313 508 ntTSL 3 BASIC41.09■■■■■ 4.17
MSH6P52701 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC41.08■■■■■ 4.17
MSH6P52701 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC41.04■■■■■ 4.16
MSH6P52701 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC41.01■■■■■ 4.16
MSH6P52701 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC41.01■■■■■ 4.16
MSH6P52701 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC40.96■■■■■ 4.15
MSH6P52701 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC40.96■■■■■ 4.15
MSH6P52701 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC40.95■■■■■ 4.15
MSH6P52701 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC40.94■■■■■ 4.14
MSH6P52701 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC40.92■■■■■ 4.14
MSH6P52701 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC40.92■■■■■ 4.14
MSH6P52701 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC40.88■■■■■ 4.13
MSH6P52701 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC40.85■■■■■ 4.13
MSH6P52701 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC40.85■■■■■ 4.13
MSH6P52701 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC40.84■■■■■ 4.13
MSH6P52701 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC40.82■■■■■ 4.13
MSH6P52701 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC40.79■■■■■ 4.12
MSH6P52701 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC40.78■■■■■ 4.12
MSH6P52701 AL162393.1-201ENST00000437852 946 ntBASIC40.76■■■■■ 4.12
MSH6P52701 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC40.75■■■■■ 4.11
MSH6P52701 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC40.74■■■■■ 4.11
MSH6P52701 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC40.71■■■■■ 4.11
MSH6P52701 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC40.7■■■■■ 4.11
MSH6P52701 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC40.68■■■■■ 4.1
MSH6P52701 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC40.67■■■■■ 4.1
MSH6P52701 NRG1-221ENST00000614767 762 ntTSL 5 BASIC40.61■■■■■ 4.09
MSH6P52701 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC40.59■■■■■ 4.09
MSH6P52701 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC40.59■■■■■ 4.09
MSH6P52701 AP006261.1-201ENST00000584783 668 ntBASIC40.59■■■■■ 4.09
MSH6P52701 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC40.59■■■■■ 4.09
MSH6P52701 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC40.55■■■■■ 4.08
MSH6P52701 CAHM-201ENST00000604200 896 ntBASIC40.54■■■■■ 4.08
MSH6P52701 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC40.54■■■■■ 4.08
MSH6P52701 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC40.47■■■■■ 4.07
MSH6P52701 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC40.46■■■■■ 4.07
MSH6P52701 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC40.42■■■■■ 4.06
MSH6P52701 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC40.42■■■■■ 4.06
MSH6P52701 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC40.41■■■■■ 4.06
MSH6P52701 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC40.39■■■■■ 4.06
MSH6P52701 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC40.38■■■■■ 4.06
MSH6P52701 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC40.37■■■■■ 4.05
MSH6P52701 MIR7108-201ENST00000614319 87 ntBASIC40.35■■■■■ 4.05
MSH6P52701 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC40.33■■■■■ 4.05
MSH6P52701 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC40.32■■■■■ 4.05
MSH6P52701 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC40.31■■■■■ 4.04
MSH6P52701 AL391121.1-201ENST00000607967 1349 ntBASIC40.3■■■■■ 4.04
MSH6P52701 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC40.3■■■■■ 4.04
MSH6P52701 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC40.3■■■■■ 4.04
MSH6P52701 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC40.29■■■■■ 4.04
MSH6P52701 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC40.29■■■■■ 4.04
MSH6P52701 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC40.29■■■■■ 4.04
MSH6P52701 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC40.26■■■■■ 4.04
MSH6P52701 HNRNPLP2-201ENST00000568980 1570 ntBASIC40.24■■■■■ 4.03
MSH6P52701 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC40.23■■■■■ 4.03
MSH6P52701 ABHD17AP4-201ENST00000411545 909 ntBASIC40.23■■■■■ 4.03
MSH6P52701 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC40.17■■■■■ 4.02
MSH6P52701 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC40.15■■■■■ 4.02
MSH6P52701 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC40.12■■■■■ 4.01
MSH6P52701 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC40.11■■■■■ 4.01
MSH6P52701 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC40.11■■■■■ 4.01
MSH6P52701 PVT1-219ENST00000523427 938 ntTSL 3 BASIC40.1■■■■■ 4.01
MSH6P52701 MLEC-202ENST00000412616 841 ntTSL 3 BASIC40.06■■■■■ 4
MSH6P52701 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC40.06■■■■■ 4
MSH6P52701 MVK-208ENST00000539696 608 ntTSL 5 BASIC40.05■■■■■ 4
Retrieved 100 of 98,524 protein–RNA pairs in 63.5 ms