Protein–RNA interactions for Protein: A0A0B4J268

TRAV4, T-cell receptor alpha variable 4 (Fragment), humanhuman

Predictions only

Length 109 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV4A0A0B4J268 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
TRAV4A0A0B4J268 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
TRAV4A0A0B4J268 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
TRAV4A0A0B4J268 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
TRAV4A0A0B4J268 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TRAV4A0A0B4J268 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
TRAV4A0A0B4J268 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
TRAV4A0A0B4J268 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC20.42■□□□□ 0.86
TRAV4A0A0B4J268 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
TRAV4A0A0B4J268 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
TRAV4A0A0B4J268 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC20.39■□□□□ 0.86
TRAV4A0A0B4J268 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.86
TRAV4A0A0B4J268 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
TRAV4A0A0B4J268 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.86
TRAV4A0A0B4J268 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
TRAV4A0A0B4J268 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC20.39■□□□□ 0.85
TRAV4A0A0B4J268 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
TRAV4A0A0B4J268 AC006077.2-201ENST00000623591 457 ntBASIC20.38■□□□□ 0.85
TRAV4A0A0B4J268 TUBB6-201ENST00000317702 2064 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
TRAV4A0A0B4J268 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
TRAV4A0A0B4J268 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
TRAV4A0A0B4J268 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
TRAV4A0A0B4J268 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC20.3■□□□□ 0.84
TRAV4A0A0B4J268 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
TRAV4A0A0B4J268 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
TRAV4A0A0B4J268 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
TRAV4A0A0B4J268 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC20.28■□□□□ 0.84
TRAV4A0A0B4J268 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
TRAV4A0A0B4J268 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC20.25■□□□□ 0.83
TRAV4A0A0B4J268 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
TRAV4A0A0B4J268 ZNRF2P1-201ENST00000441407 443 ntBASIC20.23■□□□□ 0.83
TRAV4A0A0B4J268 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC20.22■□□□□ 0.83
TRAV4A0A0B4J268 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
TRAV4A0A0B4J268 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TRAV4A0A0B4J268 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TRAV4A0A0B4J268 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TRAV4A0A0B4J268 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TRAV4A0A0B4J268 PRKAR1B-201ENST00000360274 2007 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TRAV4A0A0B4J268 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TRAV4A0A0B4J268 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
TRAV4A0A0B4J268 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
TRAV4A0A0B4J268 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
TRAV4A0A0B4J268 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
TRAV4A0A0B4J268 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
TRAV4A0A0B4J268 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC20.14■□□□□ 0.81
TRAV4A0A0B4J268 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC20.14■□□□□ 0.81
TRAV4A0A0B4J268 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
TRAV4A0A0B4J268 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC20.12■□□□□ 0.81
TRAV4A0A0B4J268 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
TRAV4A0A0B4J268 SCARA3-202ENST00000337221 1910 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
TRAV4A0A0B4J268 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC20.1■□□□□ 0.81
TRAV4A0A0B4J268 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
TRAV4A0A0B4J268 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
TRAV4A0A0B4J268 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC20.09■□□□□ 0.81
TRAV4A0A0B4J268 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
TRAV4A0A0B4J268 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
TRAV4A0A0B4J268 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC20.09■□□□□ 0.81
TRAV4A0A0B4J268 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.81
TRAV4A0A0B4J268 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
TRAV4A0A0B4J268 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
TRAV4A0A0B4J268 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRAV4A0A0B4J268 CCZ1-201ENST00000325974 1802 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRAV4A0A0B4J268 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC20.05■□□□□ 0.8
TRAV4A0A0B4J268 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
TRAV4A0A0B4J268 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC20.04■□□□□ 0.8
TRAV4A0A0B4J268 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
TRAV4A0A0B4J268 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TRAV4A0A0B4J268 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
TRAV4A0A0B4J268 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
TRAV4A0A0B4J268 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC20.01■□□□□ 0.79
TRAV4A0A0B4J268 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
TRAV4A0A0B4J268 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
TRAV4A0A0B4J268 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
TRAV4A0A0B4J268 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
TRAV4A0A0B4J268 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC19.97■□□□□ 0.79
TRAV4A0A0B4J268 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC19.97■□□□□ 0.79
TRAV4A0A0B4J268 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
TRAV4A0A0B4J268 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
TRAV4A0A0B4J268 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC19.97■□□□□ 0.79
TRAV4A0A0B4J268 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
TRAV4A0A0B4J268 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC19.96■□□□□ 0.79
TRAV4A0A0B4J268 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC19.96■□□□□ 0.79
TRAV4A0A0B4J268 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC19.96■□□□□ 0.79
TRAV4A0A0B4J268 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
TRAV4A0A0B4J268 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
TRAV4A0A0B4J268 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC19.95■□□□□ 0.78
TRAV4A0A0B4J268 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
TRAV4A0A0B4J268 MVK-208ENST00000539696 608 ntTSL 5 BASIC19.92■□□□□ 0.78
TRAV4A0A0B4J268 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
TRAV4A0A0B4J268 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC19.91■□□□□ 0.78
TRAV4A0A0B4J268 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
TRAV4A0A0B4J268 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
TRAV4A0A0B4J268 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
TRAV4A0A0B4J268 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
TRAV4A0A0B4J268 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
TRAV4A0A0B4J268 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC19.88■□□□□ 0.77
TRAV4A0A0B4J268 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC19.87■□□□□ 0.77
TRAV4A0A0B4J268 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC19.87■□□□□ 0.77
TRAV4A0A0B4J268 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC19.87■□□□□ 0.77
TRAV4A0A0B4J268 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 15.1 ms