Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
PCDHGA1Q9Y5H4 AZGP1P1-201ENST00000411909 902 ntBASIC15.31■□□□□ 0.04
PCDHGA1Q9Y5H4 BAATP1-201ENST00000412284 1225 ntBASIC15.31■□□□□ 0.04
PCDHGA1Q9Y5H4 AC016694.1-201ENST00000434179 700 ntBASIC15.31■□□□□ 0.04
PCDHGA1Q9Y5H4 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC15.31■□□□□ 0.04
PCDHGA1Q9Y5H4 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC15.31■□□□□ 0.04
PCDHGA1Q9Y5H4 PARP8-218ENST00000513738 596 ntTSL 4 BASIC15.31■□□□□ 0.04
PCDHGA1Q9Y5H4 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC15.31■□□□□ 0.04
PCDHGA1Q9Y5H4 AURKB-202ENST00000534871 1167 ntTSL 2 BASIC15.31■□□□□ 0.04
PCDHGA1Q9Y5H4 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC15.31■□□□□ 0.04
PCDHGA1Q9Y5H4 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC15.31■□□□□ 0.04
PCDHGA1Q9Y5H4 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC15.31■□□□□ 0.04
PCDHGA1Q9Y5H4 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC15.31■□□□□ 0.04
PCDHGA1Q9Y5H4 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC15.31■□□□□ 0.04
PCDHGA1Q9Y5H4 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC15.31■□□□□ 0.04
PCDHGA1Q9Y5H4 AC010328.2-201ENST00000597698 1111 ntBASIC15.31■□□□□ 0.04
PCDHGA1Q9Y5H4 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC15.31■□□□□ 0.04
PCDHGA1Q9Y5H4 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
PCDHGA1Q9Y5H4 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PCDHGA1Q9Y5H4 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC15.31■□□□□ 0.04
PCDHGA1Q9Y5H4 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PCDHGA1Q9Y5H4 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
PCDHGA1Q9Y5H4 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC15.31■□□□□ 0.04
PCDHGA1Q9Y5H4 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
PCDHGA1Q9Y5H4 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
PCDHGA1Q9Y5H4 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC15.31■□□□□ 0.04
PCDHGA1Q9Y5H4 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC15.31■□□□□ 0.04
PCDHGA1Q9Y5H4 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
PCDHGA1Q9Y5H4 LTF-203ENST00000426532 2494 ntTSL 2 BASIC15.31■□□□□ 0.04
PCDHGA1Q9Y5H4 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC15.31■□□□□ 0.04
PCDHGA1Q9Y5H4 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC15.3■□□□□ 0.04
PCDHGA1Q9Y5H4 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PCDHGA1Q9Y5H4 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC15.3■□□□□ 0.04
PCDHGA1Q9Y5H4 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PCDHGA1Q9Y5H4 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC15.3■□□□□ 0.04
PCDHGA1Q9Y5H4 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PCDHGA1Q9Y5H4 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
PCDHGA1Q9Y5H4 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
PCDHGA1Q9Y5H4 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
PCDHGA1Q9Y5H4 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
PCDHGA1Q9Y5H4 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PCDHGA1Q9Y5H4 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PCDHGA1Q9Y5H4 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
PCDHGA1Q9Y5H4 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
PCDHGA1Q9Y5H4 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
PCDHGA1Q9Y5H4 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
PCDHGA1Q9Y5H4 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC15.3■□□□□ 0.04
PCDHGA1Q9Y5H4 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
PCDHGA1Q9Y5H4 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC15.3■□□□□ 0.04
PCDHGA1Q9Y5H4 C1QBPP1-201ENST00000400117 770 ntBASIC15.3■□□□□ 0.04
PCDHGA1Q9Y5H4 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC15.3■□□□□ 0.04
PCDHGA1Q9Y5H4 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC15.3■□□□□ 0.04
PCDHGA1Q9Y5H4 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
PCDHGA1Q9Y5H4 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC15.3■□□□□ 0.04
PCDHGA1Q9Y5H4 AC099548.2-209ENST00000480264 625 ntBASIC15.3■□□□□ 0.04
PCDHGA1Q9Y5H4 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
PCDHGA1Q9Y5H4 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
PCDHGA1Q9Y5H4 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC15.3■□□□□ 0.04
PCDHGA1Q9Y5H4 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC15.3■□□□□ 0.04
PCDHGA1Q9Y5H4 EMC4-209ENST00000559421 497 ntTSL 2 BASIC15.3■□□□□ 0.04
PCDHGA1Q9Y5H4 AC120045.2-201ENST00000567334 178 ntBASIC15.3■□□□□ 0.04
PCDHGA1Q9Y5H4 AP001063.1-201ENST00000568332 529 ntBASIC15.3■□□□□ 0.04
PCDHGA1Q9Y5H4 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC15.3■□□□□ 0.04
PCDHGA1Q9Y5H4 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC15.3■□□□□ 0.04
PCDHGA1Q9Y5H4 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
PCDHGA1Q9Y5H4 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC15.3■□□□□ 0.04
PCDHGA1Q9Y5H4 AL139099.5-201ENST00000635274 300 ntBASIC15.3■□□□□ 0.04
PCDHGA1Q9Y5H4 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PCDHGA1Q9Y5H4 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
PCDHGA1Q9Y5H4 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
PCDHGA1Q9Y5H4 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
PCDHGA1Q9Y5H4 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PCDHGA1Q9Y5H4 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PCDHGA1Q9Y5H4 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
PCDHGA1Q9Y5H4 AC018695.7-201ENST00000624587 2492 ntBASIC15.29■□□□□ 0.04
PCDHGA1Q9Y5H4 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC15.29■□□□□ 0.04
PCDHGA1Q9Y5H4 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC15.29■□□□□ 0.04
PCDHGA1Q9Y5H4 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PCDHGA1Q9Y5H4 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC15.29■□□□□ 0.04
PCDHGA1Q9Y5H4 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
PCDHGA1Q9Y5H4 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
PCDHGA1Q9Y5H4 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC15.29■□□□□ 0.04
PCDHGA1Q9Y5H4 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
PCDHGA1Q9Y5H4 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PCDHGA1Q9Y5H4 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC15.29■□□□□ 0.04
PCDHGA1Q9Y5H4 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC15.29■□□□□ 0.04
PCDHGA1Q9Y5H4 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
PCDHGA1Q9Y5H4 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
PCDHGA1Q9Y5H4 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PCDHGA1Q9Y5H4 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC15.29■□□□□ 0.04
PCDHGA1Q9Y5H4 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC15.29■□□□□ 0.04
PCDHGA1Q9Y5H4 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC15.29■□□□□ 0.04
PCDHGA1Q9Y5H4 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PCDHGA1Q9Y5H4 MCHR2-202ENST00000369212 1311 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PCDHGA1Q9Y5H4 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
PCDHGA1Q9Y5H4 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
PCDHGA1Q9Y5H4 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PCDHGA1Q9Y5H4 POLD4-201ENST00000312419 918 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PCDHGA1Q9Y5H4 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
PCDHGA1Q9Y5H4 CATSPERZ-201ENST00000328404 743 ntAPPRIS P5 TSL 1 (best) BASIC15.29■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 66.8 ms