Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC15.84■□□□□ 0.13
TTC28Q96AY4 NHP2-202ENST00000314397 599 ntTSL 2 BASIC15.84■□□□□ 0.13
TTC28Q96AY4 S100A3-202ENST00000368713 856 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
TTC28Q96AY4 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
TTC28Q96AY4 KLK8-204ENST00000391806 1051 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
TTC28Q96AY4 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
TTC28Q96AY4 AL118508.1-202ENST00000411595 709 ntTSL 2 BASIC15.84■□□□□ 0.13
TTC28Q96AY4 PTGES3-203ENST00000436399 941 ntTSL 2 BASIC15.84■□□□□ 0.13
TTC28Q96AY4 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
TTC28Q96AY4 CTB-178M22.2-201ENST00000519795 503 ntTSL 4 BASIC15.84■□□□□ 0.13
TTC28Q96AY4 ADIG-204ENST00000537425 770 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
TTC28Q96AY4 PLEKHA8P1-203ENST00000545609 277 ntTSL 3 BASIC15.84■□□□□ 0.13
TTC28Q96AY4 AC006548.2-201ENST00000605217 529 ntBASIC15.84■□□□□ 0.13
TTC28Q96AY4 AP003900.1-201ENST00000622592 859 ntTSL 3 BASIC15.84■□□□□ 0.13
TTC28Q96AY4 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
TTC28Q96AY4 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC15.83■□□□□ 0.13
TTC28Q96AY4 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
TTC28Q96AY4 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC15.83■□□□□ 0.13
TTC28Q96AY4 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
TTC28Q96AY4 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.13
TTC28Q96AY4 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
TTC28Q96AY4 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
TTC28Q96AY4 CSHL1-205ENST00000438387 566 ntTSL 5 BASIC15.83■□□□□ 0.12
TTC28Q96AY4 AL451069.3-201ENST00000450206 1013 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
TTC28Q96AY4 AC084262.1-201ENST00000567818 751 ntBASIC15.83■□□□□ 0.12
TTC28Q96AY4 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
TTC28Q96AY4 OS9-205ENST00000413095 1660 ntTSL 2 BASIC15.83■□□□□ 0.12
TTC28Q96AY4 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC15.83■□□□□ 0.12
TTC28Q96AY4 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
TTC28Q96AY4 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC15.83■□□□□ 0.12
TTC28Q96AY4 LINC02021-201ENST00000504808 1608 ntTSL 3 BASIC15.83■□□□□ 0.12
TTC28Q96AY4 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC15.83■□□□□ 0.12
TTC28Q96AY4 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC15.83■□□□□ 0.12
TTC28Q96AY4 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
TTC28Q96AY4 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC15.83■□□□□ 0.12
TTC28Q96AY4 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC15.83■□□□□ 0.12
TTC28Q96AY4 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
TTC28Q96AY4 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.12
TTC28Q96AY4 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
TTC28Q96AY4 RAB25-201ENST00000361084 1110 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
TTC28Q96AY4 TEX33-202ENST00000402860 986 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
TTC28Q96AY4 SNCB-203ENST00000506696 552 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
TTC28Q96AY4 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
TTC28Q96AY4 AC093330.1-206ENST00000582546 812 ntTSL 3 BASIC15.83■□□□□ 0.12
TTC28Q96AY4 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
TTC28Q96AY4 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC15.82■□□□□ 0.12
TTC28Q96AY4 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC15.82■□□□□ 0.12
TTC28Q96AY4 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC15.82■□□□□ 0.12
TTC28Q96AY4 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC15.82■□□□□ 0.12
TTC28Q96AY4 AC245100.1-201ENST00000452996 1331 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
TTC28Q96AY4 BX323043.1-201ENST00000641006 1765 ntBASIC15.82■□□□□ 0.12
TTC28Q96AY4 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
TTC28Q96AY4 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC15.82■□□□□ 0.12
TTC28Q96AY4 APBB3-205ENST00000412920 1455 ntAPPRIS ALT1 TSL 1 (best) BASIC15.82■□□□□ 0.12
TTC28Q96AY4 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
TTC28Q96AY4 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC15.82■□□□□ 0.12
TTC28Q96AY4 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
TTC28Q96AY4 INS-IGF2-202ENST00000397270 828 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
TTC28Q96AY4 ATXN8OS-202ENST00000424524 1236 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
TTC28Q96AY4 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC15.82■□□□□ 0.12
TTC28Q96AY4 CHCHD2P2-201ENST00000503744 321 ntBASIC15.82■□□□□ 0.12
TTC28Q96AY4 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC15.82■□□□□ 0.12
TTC28Q96AY4 AP003068.3-201ENST00000527789 175 ntTSL 2 BASIC15.82■□□□□ 0.12
TTC28Q96AY4 AC007656.1-201ENST00000552238 573 ntTSL 4 BASIC15.82■□□□□ 0.12
TTC28Q96AY4 TUBB3-208ENST00000555576 572 ntTSL 4 BASIC15.82■□□□□ 0.12
TTC28Q96AY4 AL132801.1-201ENST00000559675 567 ntTSL 4 BASIC15.82■□□□□ 0.12
TTC28Q96AY4 AC010335.1-201ENST00000594590 599 ntTSL 3 BASIC15.82■□□□□ 0.12
TTC28Q96AY4 MBD3L2B-201ENST00000636986 860 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
TTC28Q96AY4 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC15.82■□□□□ 0.12
TTC28Q96AY4 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC15.82■□□□□ 0.12
TTC28Q96AY4 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
TTC28Q96AY4 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
TTC28Q96AY4 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
TTC28Q96AY4 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC15.82■□□□□ 0.12
TTC28Q96AY4 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
TTC28Q96AY4 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
TTC28Q96AY4 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
TTC28Q96AY4 SUMO4-201ENST00000326669 1066 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
TTC28Q96AY4 PLA2G2A-202ENST00000400520 974 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
TTC28Q96AY4 ZNF226-203ENST00000413984 716 ntTSL 3 BASIC15.82■□□□□ 0.12
TTC28Q96AY4 EIF5A2-205ENST00000487522 565 ntTSL 3 BASIC15.82■□□□□ 0.12
TTC28Q96AY4 RBM4-211ENST00000530235 1011 ntTSL 3 BASIC15.82■□□□□ 0.12
TTC28Q96AY4 AC019294.2-203ENST00000569596 594 ntTSL 3 BASIC15.82■□□□□ 0.12
TTC28Q96AY4 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC15.81■□□□□ 0.12
TTC28Q96AY4 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
TTC28Q96AY4 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
TTC28Q96AY4 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC15.81■□□□□ 0.12
TTC28Q96AY4 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
TTC28Q96AY4 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC15.81■□□□□ 0.12
TTC28Q96AY4 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
TTC28Q96AY4 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
TTC28Q96AY4 RNU1-114P-201ENST00000365297 166 ntBASIC15.81■□□□□ 0.12
TTC28Q96AY4 AP1B1P1-201ENST00000432373 827 ntTSL 3 BASIC15.81■□□□□ 0.12
TTC28Q96AY4 AC245100.5-201ENST00000452108 331 ntBASIC15.81■□□□□ 0.12
TTC28Q96AY4 PRRC2B-207ENST00000458550 899 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
TTC28Q96AY4 NDUFS6P1-201ENST00000485187 316 ntBASIC15.81■□□□□ 0.12
TTC28Q96AY4 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC15.81■□□□□ 0.12
TTC28Q96AY4 AC005779.2-201ENST00000593083 550 ntAPPRIS P1 TSL 4 BASIC15.81■□□□□ 0.12
TTC28Q96AY4 MIA-206ENST00000597784 455 ntAPPRIS P1 TSL 3 BASIC15.81■□□□□ 0.12
TTC28Q96AY4 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC15.81■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms