Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CX3CR1P49238 AC091812.2-201ENST00000619081 385 ntBASIC14.12□□□□□ -0.15
CX3CR1P49238 NME4-212ENST00000621774 904 ntTSL 3 BASIC14.12□□□□□ -0.15
CX3CR1P49238 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CX3CR1P49238 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC14.12□□□□□ -0.15
CX3CR1P49238 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CX3CR1P49238 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC14.12□□□□□ -0.15
CX3CR1P49238 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CX3CR1P49238 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CX3CR1P49238 WARS-232ENST00000556645 2508 ntTSL 5 BASIC14.12□□□□□ -0.15
CX3CR1P49238 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC14.12□□□□□ -0.15
CX3CR1P49238 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC14.12□□□□□ -0.15
CX3CR1P49238 AC144831.1-201ENST00000573312 2656 ntBASIC14.12□□□□□ -0.15
CX3CR1P49238 ZNF831-201ENST00000371030 9401 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CX3CR1P49238 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
CX3CR1P49238 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC14.12□□□□□ -0.15
CX3CR1P49238 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CX3CR1P49238 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CX3CR1P49238 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC14.12□□□□□ -0.15
CX3CR1P49238 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CX3CR1P49238 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
CX3CR1P49238 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CX3CR1P49238 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
CX3CR1P49238 WSCD1-201ENST00000317744 5819 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CX3CR1P49238 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
CX3CR1P49238 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CX3CR1P49238 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CX3CR1P49238 CEP170B-204ENST00000556508 6683 ntTSL 5 BASIC14.11□□□□□ -0.15
CX3CR1P49238 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
CX3CR1P49238 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC14.11□□□□□ -0.15
CX3CR1P49238 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC14.11□□□□□ -0.15
CX3CR1P49238 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CX3CR1P49238 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC14.11□□□□□ -0.15
CX3CR1P49238 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC14.11□□□□□ -0.15
CX3CR1P49238 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CX3CR1P49238 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC14.11□□□□□ -0.15
CX3CR1P49238 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CX3CR1P49238 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
CX3CR1P49238 TEX30-205ENST00000376029 959 ntTSL 2 BASIC14.11□□□□□ -0.15
CX3CR1P49238 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
CX3CR1P49238 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CX3CR1P49238 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC14.11□□□□□ -0.15
CX3CR1P49238 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC14.11□□□□□ -0.15
CX3CR1P49238 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CX3CR1P49238 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC14.11□□□□□ -0.15
CX3CR1P49238 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC14.11□□□□□ -0.15
CX3CR1P49238 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC14.11□□□□□ -0.15
CX3CR1P49238 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC14.11□□□□□ -0.15
CX3CR1P49238 AC105233.2-201ENST00000523697 349 ntBASIC14.11□□□□□ -0.15
CX3CR1P49238 AF228730.5-201ENST00000530288 346 ntBASIC14.11□□□□□ -0.15
CX3CR1P49238 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
CX3CR1P49238 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC14.11□□□□□ -0.15
CX3CR1P49238 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC14.11□□□□□ -0.15
CX3CR1P49238 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC14.11□□□□□ -0.15
CX3CR1P49238 AL138918.1-201ENST00000568306 659 ntBASIC14.11□□□□□ -0.15
CX3CR1P49238 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC14.11□□□□□ -0.15
CX3CR1P49238 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
CX3CR1P49238 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
CX3CR1P49238 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CX3CR1P49238 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
CX3CR1P49238 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CX3CR1P49238 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC14.11□□□□□ -0.15
CX3CR1P49238 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC14.11□□□□□ -0.15
CX3CR1P49238 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC14.11□□□□□ -0.15
CX3CR1P49238 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CX3CR1P49238 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC14.11□□□□□ -0.15
CX3CR1P49238 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC14.11□□□□□ -0.15
CX3CR1P49238 AP001282.1-201ENST00000531301 1499 ntBASIC14.11□□□□□ -0.15
CX3CR1P49238 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CX3CR1P49238 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
CX3CR1P49238 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CX3CR1P49238 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CX3CR1P49238 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CX3CR1P49238 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
CX3CR1P49238 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CX3CR1P49238 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC14.1□□□□□ -0.15
CX3CR1P49238 AC006058.4-201ENST00000624016 1670 ntBASIC14.1□□□□□ -0.15
CX3CR1P49238 LMX1B-201ENST00000355497 5809 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CX3CR1P49238 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CX3CR1P49238 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC14.1□□□□□ -0.15
CX3CR1P49238 AL161772.1-201ENST00000610494 4412 ntBASIC14.1□□□□□ -0.15
CX3CR1P49238 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC14.1□□□□□ -0.15
CX3CR1P49238 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CX3CR1P49238 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
CX3CR1P49238 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CX3CR1P49238 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CX3CR1P49238 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
CX3CR1P49238 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CX3CR1P49238 GOLGA2P9-201ENST00000596977 1937 ntBASIC14.1□□□□□ -0.15
CX3CR1P49238 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC14.1□□□□□ -0.15
CX3CR1P49238 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
CX3CR1P49238 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CX3CR1P49238 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC14.1□□□□□ -0.15
CX3CR1P49238 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
CX3CR1P49238 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC14.1□□□□□ -0.15
CX3CR1P49238 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CX3CR1P49238 MIR940-201ENST00000401276 94 ntBASIC14.1□□□□□ -0.15
CX3CR1P49238 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC14.1□□□□□ -0.15
CX3CR1P49238 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC14.1□□□□□ -0.15
CX3CR1P49238 AL355306.1-201ENST00000415580 579 ntBASIC14.1□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms