Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC19.6■□□□□ 0.732e-7■□□□□ 10.7
YBX3P16989 CDK2-211ENST00000556464 609 ntTSL 318.76■□□□□ 0.592e-7■□□□□ 10.7
YBX3P16989 CDK2-206ENST00000554619 1802 ntTSL 518.7■□□□□ 0.582e-7■□□□□ 10.7
YBX3P16989 CDK2-203ENST00000440311 1031 ntTSL 2 BASIC18.01■□□□□ 0.472e-7■□□□□ 10.7
YBX3P16989 CDK2-201ENST00000266970 2296 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.152e-7■□□□□ 10.7
YBX3P16989 VAMP7-201ENST00000262640 2496 ntTSL 1 (best) BASIC15.12■□□□□ 0.017e-9■□□□□ 10.7
YBX3P16989 CDK2-208ENST00000555408 2598 ntTSL 313.31□□□□□ -0.282e-7■□□□□ 10.7
YBX3P16989 VAMP7-202ENST00000286448 2646 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.287e-9■□□□□ 10.7
YBX3P16989 CDK2-209ENST00000556146 911 ntTSL 312.83□□□□□ -0.362e-7■□□□□ 10.7
YBX3P16989 CDK2-212ENST00000556656 1136 ntTSL 312.78□□□□□ -0.362e-7■□□□□ 10.7
YBX3P16989 CDK2-210ENST00000556276 665 ntTSL 59.99□□□□□ -0.812e-7■□□□□ 10.7
YBX3P16989 MLH1-201ENST00000231790 2752 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.431e-10■□□□□ 10.7
YBX3P16989 MLH1-221ENST00000536378 2567 ntTSL 2 BASIC12.21□□□□□ -0.451e-10■□□□□ 10.7
YBX3P16989 MLH1-216ENST00000458205 2608 ntTSL 1 (best) BASIC11.88□□□□□ -0.511e-10■□□□□ 10.7
YBX3P16989 MLH1-222ENST00000539477 2366 ntTSL 2 BASIC11.82□□□□□ -0.521e-10■□□□□ 10.7
YBX3P16989 MLH1-213ENST00000456676 2230 ntTSL 1 (best)11.36□□□□□ -0.591e-10■□□□□ 10.7
YBX3P16989 MLH1-206ENST00000435176 2428 ntTSL 2 BASIC8.58□□□□□ -1.041e-10■□□□□ 10.7
YBX3P16989 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC4.26□□□□□ -1.731e-10■□□□□ 10.7
YBX3P16989 EIF3F-205ENST00000531329 1072 ntTSL 217.52■□□□□ 0.43e-14■□□□□ 10.7
YBX3P16989 EIF3F-201ENST00000309828 1254 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.213e-14■□□□□ 10.7
YBX3P16989 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.151e-6■□□□□ 10.7
YBX3P16989 DDX3X-212ENST00000616050 818 ntTSL 515.9■□□□□ 0.142e-10■□□□□ 10.7
YBX3P16989 DDX3X-201ENST00000399959 5399 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.222e-10■□□□□ 10.7
YBX3P16989 EIF3F-204ENST00000530219 2110 ntTSL 213.05□□□□□ -0.323e-14■□□□□ 10.7
YBX3P16989 DDX3X-216ENST00000626301 3013 ntTSL 5 BASIC11.54□□□□□ -0.562e-10■□□□□ 10.7
YBX3P16989 DDX3X-215ENST00000625837 3237 ntTSL 5 BASIC11.49□□□□□ -0.572e-10■□□□□ 10.7
YBX3P16989 EIF3F-206ENST00000531572 485 ntTSL 211.35□□□□□ -0.591e-6■□□□□ 10.7
YBX3P16989 DDX3X-203ENST00000457138 5346 ntTSL 2 BASIC11.11□□□□□ -0.632e-10■□□□□ 10.7
YBX3P16989 DDX3X-220ENST00000630370 3120 ntTSL 510.65□□□□□ -0.72e-10■□□□□ 10.7
YBX3P16989 DDX3X-217ENST00000629496 5023 ntAPPRIS P1 TSL 5 BASIC10.39□□□□□ -0.752e-10■□□□□ 10.7
YBX3P16989 DDX3X-218ENST00000629785 3457 ntTSL 510.13□□□□□ -0.792e-10■□□□□ 10.7
YBX3P16989 DDX3X-219ENST00000630255 3289 ntTSL 510.09□□□□□ -0.792e-10■□□□□ 10.7
YBX3P16989 DDX3X-221ENST00000630858 3181 ntTSL 59.92□□□□□ -0.822e-10■□□□□ 10.7
YBX3P16989 DDX3X-204ENST00000478993 3397 ntTSL 1 (best)9.89□□□□□ -0.832e-10■□□□□ 10.7
YBX3P16989 EIF3F-208ENST00000533626 7540 ntAPPRIS P1 TSL 2 BASIC9.22□□□□□ -0.933e-14■□□□□ 10.7
YBX3P16989 EIF3F-203ENST00000528763 609 ntTSL 25.47□□□□□ -1.536e-17■□□□□ 10.7
YBX3P16989 PLEC-211ENST00000527303 598 ntTSL 329.72■■■□□ 2.353e-6■□□□□ 10.7
YBX3P16989 CTPS1-202ENST00000372621 3201 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.343e-7■□□□□ 10.7
YBX3P16989 CTPS1-201ENST00000372616 2037 ntAPPRIS P1 TSL 2 BASIC7.66□□□□□ -1.183e-7■□□□□ 10.7
YBX3P16989 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.472e-7■□□□□ 10.7
YBX3P16989 CSNK1E-201ENST00000359867 2642 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.22e-7■□□□□ 10.7
YBX3P16989 TTL-201ENST00000233336 14269 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.763e-6■□□□□ 10.7
YBX3P16989 CCNG1-201ENST00000340828 2458 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.032e-9■□□□□ 10.7
YBX3P16989 CCNG1-202ENST00000393929 2366 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.012e-9■□□□□ 10.7
YBX3P16989 EMC3-204ENST00000487465 1909 ntTSL 1 (best)13.03□□□□□ -0.329e-7■□□□□ 10.7
YBX3P16989 EMC3-201ENST00000245046 2777 ntAPPRIS P1 TSL 1 (best) BASIC10.09□□□□□ -0.799e-7■□□□□ 10.7
YBX3P16989 ISCU-212ENST00000547005 795 ntTSL 3 BASIC26.68■■□□□ 1.863e-8■□□□□ 10.7
YBX3P16989 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC25.43■■□□□ 1.663e-8■□□□□ 10.7
YBX3P16989 ISCU-203ENST00000431221 799 ntTSL 2 BASIC25.43■■□□□ 1.663e-8■□□□□ 10.7
YBX3P16989 ISCU-207ENST00000539580 1169 ntTSL 1 (best)25.43■■□□□ 1.663e-8■□□□□ 10.7
YBX3P16989 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.63e-8■□□□□ 10.7
YBX3P16989 ISCU-211ENST00000545932 3685 ntTSL 213.57□□□□□ -0.243e-8■□□□□ 10.7
YBX3P16989 ISCU-209ENST00000540154 385 ntTSL 38.1□□□□□ -1.113e-8■□□□□ 10.7
YBX3P16989 ISCU-206ENST00000538193 423 ntTSL 27.55□□□□□ -1.23e-8■□□□□ 10.7
YBX3P16989 IPO5-210ENST00000471898 556 ntTSL 422.14■■□□□ 1.131e-9■□□□□ 10.7
YBX3P16989 IPO5-204ENST00000421861 564 ntTSL 413.46□□□□□ -0.251e-9■□□□□ 10.7
YBX3P16989 IPO5-217ENST00000481689 568 ntTSL 411.21□□□□□ -0.611e-9■□□□□ 10.7
YBX3P16989 IPO5-216ENST00000481455 555 ntTSL 410.93□□□□□ -0.661e-9■□□□□ 10.7
YBX3P16989 IPO5-227ENST00000496368 542 ntTSL 48.46□□□□□ -1.061e-9■□□□□ 10.7
YBX3P16989 IPO5-214ENST00000480611 591 ntTSL 48.01□□□□□ -1.131e-9■□□□□ 10.7
YBX3P16989 PRPF8-212ENST00000575116 460 ntTSL 314.32□□□□□ -0.129e-9■□□□□ 10.7
YBX3P16989 FLNB-210ENST00000481470 6497 ntTSL 1 (best)10.29□□□□□ -0.762e-7■□□□□ 10.7
YBX3P16989 CCT6A-203ENST00000462133 665 ntTSL 314.9□□□□□ -0.028e-13■□□□□ 10.7
YBX3P16989 CCT6A-204ENST00000466479 745 ntTSL 210.01□□□□□ -0.818e-13■□□□□ 10.7
YBX3P16989 CCT6A-209ENST00000494736 411 ntTSL 29.08□□□□□ -0.968e-13■□□□□ 10.7
YBX3P16989 SRSF11-216ENST00000489188 784 ntTSL 25.42□□□□□ -1.545e-9■□□□□ 10.7
YBX3P16989 HIST1H1C-201ENST00000343677 642 ntAPPRIS P1 BASIC15.75■□□□□ 0.111e-41■□□□□ 10.7
YBX3P16989 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC22.45■■□□□ 1.181e-6■□□□□ 10.6
YBX3P16989 PTPRK-204ENST00000368210 5025 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.242e-6■□□□□ 10.6
YBX3P16989 PTPRK-207ENST00000368226 6087 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.292e-6■□□□□ 10.6
YBX3P16989 PTPRK-203ENST00000368207 4758 ntTSL 5 BASIC12.69□□□□□ -0.382e-6■□□□□ 10.6
YBX3P16989 PTPRK-221ENST00000532331 5757 ntAPPRIS ALT2 TSL 1 (best) BASIC11.65□□□□□ -0.542e-6■□□□□ 10.6
YBX3P16989 PTPRK-205ENST00000368213 5816 ntAPPRIS ALT2 TSL 1 (best) BASIC11.07□□□□□ -0.642e-6■□□□□ 10.6
YBX3P16989 PTPRK-206ENST00000368215 4651 ntAPPRIS ALT2 TSL 1 (best) BASIC8.7□□□□□ -1.022e-6■□□□□ 10.6
YBX3P16989 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC23.33■■□□□ 1.332e-8■□□□□ 10.6
YBX3P16989 PFKL-210ENST00000496824 1063 ntTSL 527.2■■□□□ 1.941e-8■□□□□ 10.6
YBX3P16989 PFKL-208ENST00000491298 819 ntTSL 520.55■□□□□ 0.881e-8■□□□□ 10.6
YBX3P16989 TCF12-224ENST00000561346 852 ntTSL 28.15□□□□□ -1.12e-6■□□□□ 10.6
YBX3P16989 FANCI-212ENST00000566895 4663 ntTSL 26.38□□□□□ -1.392e-9■□□□□ 10.6
YBX3P16989 SRP72-204ENST00000507126 2181 ntTSL 1 (best)5.52□□□□□ -1.536e-8■□□□□ 10.6
YBX3P16989 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.999e-7■□□□□ 10.6
YBX3P16989 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.969e-7■□□□□ 10.6
YBX3P16989 C19orf48-212ENST00000600373 709 ntTSL 219.19■□□□□ 0.666e-8■□□□□ 10.6
YBX3P16989 C19orf48-213ENST00000601267 782 ntTSL 217.22■□□□□ 0.356e-8■□□□□ 10.6
YBX3P16989 C19orf48-203ENST00000593287 578 ntTSL 516.87■□□□□ 0.296e-8■□□□□ 10.6
YBX3P16989 C19orf48-208ENST00000597493 971 ntTSL 216.2■□□□□ 0.186e-8■□□□□ 10.6
YBX3P16989 TOP2A-202ENST00000577541 420 ntTSL 27.38□□□□□ -1.231e-8■□□□□ 10.6
YBX3P16989 ARAF-206ENST00000489496 472 ntTSL 521.16■□□□□ 0.984e-7■□□□□ 10.6
YBX3P16989 ARAF-202ENST00000377039 1271 ntTSL 2 BASIC16.9■□□□□ 0.34e-7■□□□□ 10.6
YBX3P16989 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.851e-7■□□□□ 10.6
YBX3P16989 UQCRC1-209ENST00000480561 1014 ntTSL 220.05■□□□□ 0.82e-8■□□□□ 10.6
YBX3P16989 UQCRC1-203ENST00000415995 1387 ntTSL 519.69■□□□□ 0.741e-7■□□□□ 10.6
YBX3P16989 UQCRC1-204ENST00000460105 622 ntTSL 218.97■□□□□ 0.631e-8■□□□□ 10.6
YBX3P16989 UQCRC1-207ENST00000471189 955 ntTSL 317.92■□□□□ 0.461e-8■□□□□ 10.6
YBX3P16989 UBC-210ENST00000541645 548 ntTSL 222.95■■□□□ 1.264e-14■□□□□ 10.6
YBX3P16989 UBC-202ENST00000535131 563 ntTSL 517.41■□□□□ 0.384e-14■□□□□ 10.6
YBX3P16989 OAZ1-209ENST00000592787 857 ntTSL 221.35■■□□□ 1.012e-47■□□□□ 10.6
YBX3P16989 ERBIN-205ENST00000416865 2351 ntTSL 2 BASIC8.2□□□□□ -1.12e-8■□□□□ 10.6
YBX3P16989 ERBIN-208ENST00000506030 4386 ntTSL 1 (best) BASIC5.19□□□□□ -1.582e-8■□□□□ 10.6
YBX3P16989 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC3.96□□□□□ -1.782e-8■□□□□ 10.6
Retrieved 100 of 29,075 protein–RNA pairs in 137.3 ms