RNA–Protein interactions for RNA: ENST00000577541.1

TOP2A-202, Transcript of DNA topoisomerase II alpha, humanhuman

TSL 2

Gene TOP2A, Length 420 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP2A-202ENST00000577541 AEBP2Q6ZN18 517 aaPredicted RBP25.99■■□□□ 1.75
TOP2A-202ENST00000577541 CHIC1Q5VXU3 224 aa24.17■■□□□ 1.46
TOP2A-202ENST00000577541 SENP3Q9H4L4 574 aaPredicted RBP22.16■■□□□ 1.14
TOP2A-202ENST00000577541 PHF23Q9BUL5 403 aaPredicted RBP21.79■■□□□ 1.08
TOP2A-202ENST00000577541 FOXD1Q16676 465 aa20.77■□□□□ 0.92
TOP2A-202ENST00000577541 POTEDQ86YR6 584 aa20.21■□□□□ 0.83
TOP2A-202ENST00000577541 MSH5O43196 834 aa19.65■□□□□ 0.74
TOP2A-202ENST00000577541 PIAS4Q8N2W9 510 aaPredicted RBP19.21■□□□□ 0.67
TOP2A-202ENST00000577541 PPP6R1Q9UPN7 881 aa19.04■□□□□ 0.64
TOP2A-202ENST00000577541 ADRA2BP18089 450 aa18.9■□□□□ 0.62
TOP2A-202ENST00000577541 PLPPR3Q6T4P5 718 aa18.87■□□□□ 0.61
TOP2A-202ENST00000577541 MAPK8IP2Q13387 824 aaPredicted RBP17.59■□□□□ 0.41
TOP2A-202ENST00000577541 DMRT2Q9Y5R5 561 aa17.47■□□□□ 0.39
TOP2A-202ENST00000577541 CACNB1Q02641 598 aaPredicted RBP17.25■□□□□ 0.35
TOP2A-202ENST00000577541 SCAF1Q9H7N4 1312 aaKnown RBP17.24■□□□□ 0.35
TOP2A-202ENST00000577541 DCAF8L1A6NGE4 600 aa16.81■□□□□ 0.28
TOP2A-202ENST00000577541 RNF39Q9H2S5 420 aa16.7■□□□□ 0.26
TOP2A-202ENST00000577541 HOXD11P31277 338 aaPredicted RBP16.59■□□□□ 0.25
TOP2A-202ENST00000577541 PPP4R3CPQ6ZMV5 832 aa16.49■□□□□ 0.23
TOP2A-202ENST00000577541 C1QBPQ07021 282 aaKnown RBP16.43■□□□□ 0.22
TOP2A-202ENST00000577541 RNF216Q9NWF9 866 aaPredicted RBP16.3■□□□□ 0.2
TOP2A-202ENST00000577541 CNKSR2Q8WXI2 1034 aa16.29■□□□□ 0.2
TOP2A-202ENST00000577541 DNAJC5BQ9UF47 199 aa16.15■□□□□ 0.18
TOP2A-202ENST00000577541 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.82■□□□□ 0.126e-15■■■□□ 18.1
TOP2A-202ENST00000577541 POTEHQ6S545 545 aa15.73■□□□□ 0.11
TOP2A-202ENST00000577541 NCBP3Q53F19 620 aaKnown RBP15.65■□□□□ 0.1
TOP2A-202ENST00000577541 NPM3O75607 178 aaKnown RBP15.47■□□□□ 0.07
TOP2A-202ENST00000577541 U3KPZ7 1027 aaPredicted RBP15.45■□□□□ 0.06
TOP2A-202ENST00000577541 DSG3P32926 999 aa15.44■□□□□ 0.06
TOP2A-202ENST00000577541 SPINK5Q9NQ38 1064 aaPredicted RBP15.44■□□□□ 0.06
TOP2A-202ENST00000577541 CAPN15O75808 1086 aa15.38■□□□□ 0.05
TOP2A-202ENST00000577541 ABCB7O75027 752 aa14.99□□□□□ -0.01
TOP2A-202ENST00000577541 SLC4A2P04920 1241 aa14.99□□□□□ -0.01
TOP2A-202ENST00000577541 TRHP20396 242 aaPredicted RBP14.98□□□□□ -0.01
TOP2A-202ENST00000577541 APLP2Q06481 763 aa14.94□□□□□ -0.02
TOP2A-202ENST00000577541 ZNF219Q9P2Y4 722 aaPredicted RBP14.93□□□□□ -0.02
TOP2A-202ENST00000577541 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.78□□□□□ -0.04
TOP2A-202ENST00000577541 HNRNPUL2Q1KMD3 747 aaKnown RBP14.78□□□□□ -0.04
TOP2A-202ENST00000577541 RBM42Q9BTD8 480 aaKnown RBP14.75□□□□□ -0.05
TOP2A-202ENST00000577541 KCNA4P22459 653 aa14.69□□□□□ -0.06
TOP2A-202ENST00000577541 CHRDL2Q6WN34 429 aa14.67□□□□□ -0.06
TOP2A-202ENST00000577541 SAMD1Q6SPF0 538 aaPredicted RBP14.66□□□□□ -0.06
TOP2A-202ENST00000577541 SP7Q8TDD2 431 aaPredicted RBP14.46□□□□□ -0.09
TOP2A-202ENST00000577541 POLA2Q14181 598 aa14.44□□□□□ -0.1
TOP2A-202ENST00000577541 AKT1S1Q96B36 256 aa14.27□□□□□ -0.13
TOP2A-202ENST00000577541 MYCNP04198 464 aaPredicted RBP14.26□□□□□ -0.13
TOP2A-202ENST00000577541 PIP4P2Q8N4L2 257 aa14.18□□□□□ -0.14
TOP2A-202ENST00000577541 REM2Q8IYK8 340 aaPredicted RBP14.14□□□□□ -0.15
TOP2A-202ENST00000577541 ATF5Q9Y2D1 282 aaPredicted RBP14.14□□□□□ -0.15
TOP2A-202ENST00000577541 HAX1O00165 279 aa14.12□□□□□ -0.15
TOP2A-202ENST00000577541 ZBTB12Q9Y330 459 aaPredicted RBP14.11□□□□□ -0.15
TOP2A-202ENST00000577541 OSCARQ8IYS5 282 aa14.01□□□□□ -0.17
TOP2A-202ENST00000577541 PITPNM1O00562 1244 aa14□□□□□ -0.17
TOP2A-202ENST00000577541 FXR2P51116 673 aaKnown RBP eCLIP14□□□□□ -0.171e-12■■■□□ 18.1
TOP2A-202ENST00000577541 EVX2Q03828 476 aa13.99□□□□□ -0.17
TOP2A-202ENST00000577541 FOXD4L1Q9NU39 408 aa13.78□□□□□ -0.2
TOP2A-202ENST00000577541 SLC4A1APQ9BWU0 796 aaKnown RBP13.65□□□□□ -0.22
TOP2A-202ENST00000577541 PRKAR2AP13861 404 aaKnown RBP13.63□□□□□ -0.23
TOP2A-202ENST00000577541 SPDYE2BA6NHP3 402 aa13.61□□□□□ -0.23
TOP2A-202ENST00000577541 SPDYE6P0CI01 402 aa13.61□□□□□ -0.23
TOP2A-202ENST00000577541 SPDYE2Q495Y8 402 aa13.61□□□□□ -0.23
TOP2A-202ENST00000577541 C19orf67A6NJJ6 358 aa13.57□□□□□ -0.24
TOP2A-202ENST00000577541 ZBTB22O15209 634 aa13.56□□□□□ -0.24
TOP2A-202ENST00000577541 LHX8Q68G74 356 aa13.56□□□□□ -0.24
TOP2A-202ENST00000577541 CLEC11AQ9Y240 323 aa13.54□□□□□ -0.24
TOP2A-202ENST00000577541 GABBR2O75899 941 aa13.53□□□□□ -0.24
TOP2A-202ENST00000577541 SPDYE1Q8NFV5 336 aaPredicted RBP13.53□□□□□ -0.24
TOP2A-202ENST00000577541 FBLN2P98095 1184 aa13.5□□□□□ -0.25
TOP2A-202ENST00000577541 ATXN8OSP0DMR3 200 aa13.43□□□□□ -0.26
TOP2A-202ENST00000577541 MKRN4PQ13434 485 aaPredicted RBP13.43□□□□□ -0.26
TOP2A-202ENST00000577541 CHADLQ6NUI6 762 aa13.4□□□□□ -0.26
TOP2A-202ENST00000577541 ZNF692Q9BU19 519 aaPredicted RBP13.37□□□□□ -0.27
TOP2A-202ENST00000577541 SSUH2Q9Y2M2 353 aa13.35□□□□□ -0.27
TOP2A-202ENST00000577541 POTEIP0CG38 1075 aa13.32□□□□□ -0.28
TOP2A-202ENST00000577541 PRR29P0C7W0 189 aa13.24□□□□□ -0.29
TOP2A-202ENST00000577541 PLSCR2Q9NRY7 297 aa13.21□□□□□ -0.29
TOP2A-202ENST00000577541 CD44P16070 742 aaKnown RBP13.16□□□□□ -0.3
TOP2A-202ENST00000577541 CLCN6P51797 869 aa13.14□□□□□ -0.31
TOP2A-202ENST00000577541 PABPN1Q86U42 306 aaKnown RBP eCLIP13.13□□□□□ -0.31
TOP2A-202ENST00000577541 FARP1Q9Y4F1 1045 aaPredicted RBP13.08□□□□□ -0.32
TOP2A-202ENST00000577541 DCBLD2Q96PD2 775 aa13.05□□□□□ -0.32
TOP2A-202ENST00000577541 ZNF579Q8NAF0 562 aaKnown RBP12.92□□□□□ -0.34
TOP2A-202ENST00000577541 POTEB2H3BUK9 544 aa12.89□□□□□ -0.35
TOP2A-202ENST00000577541 OTUD5Q96G74 571 aa12.89□□□□□ -0.35
TOP2A-202ENST00000577541 ZRANB1Q9UGI0 708 aa12.89□□□□□ -0.35
TOP2A-202ENST00000577541 GALR2O43603 387 aaPredicted RBP12.84□□□□□ -0.35
TOP2A-202ENST00000577541 POTEMA6NI47 508 aa12.79□□□□□ -0.36
TOP2A-202ENST00000577541 CREBZFQ9NS37 354 aa12.79□□□□□ -0.36
TOP2A-202ENST00000577541 POTEGQ6S5H5 508 aa12.74□□□□□ -0.37
TOP2A-202ENST00000577541 PELP1Q8IZL8 1130 aaKnown RBP12.71□□□□□ -0.37
TOP2A-202ENST00000577541 PHF12Q96QT6 1004 aa12.68□□□□□ -0.38
TOP2A-202ENST00000577541 PAK3O75914 559 aaPredicted RBP12.66□□□□□ -0.38
TOP2A-202ENST00000577541 STAG3Q9UJ98 1225 aa12.66□□□□□ -0.38
TOP2A-202ENST00000577541 PCDH10Q9P2E7 1040 aa12.65□□□□□ -0.38
TOP2A-202ENST00000577541 POTEJP0CG39 1038 aa12.62□□□□□ -0.39
TOP2A-202ENST00000577541 LCE2DQ5TA82 110 aaPredicted RBP12.54□□□□□ -0.4
TOP2A-202ENST00000577541 MNX1P50219 401 aaPredicted RBP12.53□□□□□ -0.4
TOP2A-202ENST00000577541 METRNQ9UJH8 293 aa12.53□□□□□ -0.4
TOP2A-202ENST00000577541 NPM1P06748 294 aaKnown RBP eCLIP12.52□□□□□ -0.41
TOP2A-202ENST00000577541 C7P10643 843 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms