Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
RNF40O75150 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC17.36■□□□□ 0.37
RNF40O75150 WARS-232ENST00000556645 2508 ntTSL 5 BASIC17.36■□□□□ 0.37
RNF40O75150 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
RNF40O75150 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
RNF40O75150 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
RNF40O75150 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
RNF40O75150 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
RNF40O75150 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
RNF40O75150 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
RNF40O75150 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC17.35■□□□□ 0.37
RNF40O75150 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
RNF40O75150 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
RNF40O75150 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
RNF40O75150 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
RNF40O75150 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
RNF40O75150 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
RNF40O75150 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC17.35■□□□□ 0.37
RNF40O75150 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC17.35■□□□□ 0.37
RNF40O75150 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
RNF40O75150 HLA-J-202ENST00000469281 1241 ntBASIC17.35■□□□□ 0.37
RNF40O75150 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC17.35■□□□□ 0.37
RNF40O75150 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC17.35■□□□□ 0.37
RNF40O75150 DUT-210ENST00000559935 569 ntTSL 3 BASIC17.35■□□□□ 0.37
RNF40O75150 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC17.35■□□□□ 0.37
RNF40O75150 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC17.35■□□□□ 0.37
RNF40O75150 INO80C-206ENST00000586489 594 ntTSL 3 BASIC17.35■□□□□ 0.37
RNF40O75150 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
RNF40O75150 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
RNF40O75150 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC17.35■□□□□ 0.37
RNF40O75150 AL645728.2-201ENST00000641974 660 ntBASIC17.35■□□□□ 0.37
RNF40O75150 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
RNF40O75150 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
RNF40O75150 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC17.35■□□□□ 0.37
RNF40O75150 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC17.35■□□□□ 0.37
RNF40O75150 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
RNF40O75150 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC17.35■□□□□ 0.37
RNF40O75150 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC17.35■□□□□ 0.37
RNF40O75150 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
RNF40O75150 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC17.35■□□□□ 0.37
RNF40O75150 HARS-203ENST00000431330 1774 ntTSL 2 BASIC17.35■□□□□ 0.37
RNF40O75150 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
RNF40O75150 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
RNF40O75150 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC17.35■□□□□ 0.37
RNF40O75150 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
RNF40O75150 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
RNF40O75150 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
RNF40O75150 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC17.35■□□□□ 0.37
RNF40O75150 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
RNF40O75150 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
RNF40O75150 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
RNF40O75150 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC17.34■□□□□ 0.37
RNF40O75150 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
RNF40O75150 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
RNF40O75150 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
RNF40O75150 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
RNF40O75150 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC17.34■□□□□ 0.37
RNF40O75150 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC17.34■□□□□ 0.37
RNF40O75150 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
RNF40O75150 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
RNF40O75150 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
RNF40O75150 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
RNF40O75150 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
RNF40O75150 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
RNF40O75150 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC17.34■□□□□ 0.37
RNF40O75150 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
RNF40O75150 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC17.34■□□□□ 0.37
RNF40O75150 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
RNF40O75150 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
RNF40O75150 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC17.34■□□□□ 0.37
RNF40O75150 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC17.34■□□□□ 0.37
RNF40O75150 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
RNF40O75150 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
RNF40O75150 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
RNF40O75150 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
RNF40O75150 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC17.34■□□□□ 0.37
RNF40O75150 AC107918.2-201ENST00000530817 355 ntBASIC17.34■□□□□ 0.37
RNF40O75150 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
RNF40O75150 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC17.34■□□□□ 0.37
RNF40O75150 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC17.34■□□□□ 0.37
RNF40O75150 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
RNF40O75150 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC17.34■□□□□ 0.37
RNF40O75150 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
RNF40O75150 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
RNF40O75150 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
RNF40O75150 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
RNF40O75150 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
RNF40O75150 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
RNF40O75150 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC17.34■□□□□ 0.37
RNF40O75150 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
RNF40O75150 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
RNF40O75150 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC17.33■□□□□ 0.37
RNF40O75150 SP100-205ENST00000409824 1802 ntTSL 5 BASIC17.33■□□□□ 0.37
RNF40O75150 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
RNF40O75150 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.37
RNF40O75150 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC17.33■□□□□ 0.37
RNF40O75150 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
RNF40O75150 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC17.33■□□□□ 0.37
RNF40O75150 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
RNF40O75150 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms